neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban
  25
  26 # Information about prospective packages to be imported from taskfiles
  27 prospective =
  28  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  29  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  35  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  36  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  37
  38 [blend package aliases]
  39 # alias a package name from a blend taskfile to an arbitray number of additional
  40 # package names -- if the original name should appear in the package list it has
  41 # to be added as an alias as well
  42 cctools = coop-computing-tools
  43 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  44 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  45 fslview = fslview fslview-doc
  46 python-mvpa = python-mvpa python-mvpa-snapshot
  47 libgiftiio-dev = libgiftiio-dev gifti-bin
  48 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  49 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  50 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  51 spm8 = matlab-spm8 spm8-data spm8-doc
  52 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  53 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  54 openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg
  55 pandas = python-pandas
  56 pysurfer = python-surfer
  57 pyxnat = python-pyxnat
  58 openwalnut = openwalnut-qt4
  59
  60 [mirrors]
  61 de = http://apsy.gse.uni-magdeburg.de/debian
  62 gr = http://neurobot.bio.auth.gr/neurodebian
  63 us-ca = http://neurodeb.pirsquared.org
  64 us-nh = http://neuro.debian.net/debian
  65 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  66
  67 [mirror names]
  68 de = Germany (University of Magdeburg)
  69 gr = Greece (Aristotle University of Thessaloniki)
  70 us-ca = USA-CA (Paul Ivanov, California)
  71 us-nh = USA-NH (Dartmouth College)
  72 us-tn = USA-TN (Vanderbilt)
  73
  74 [neurodebian]
  75 # Release files of all repositories to be contained in the website
  76 releases =
  77  http://neuro.debian.net/debian/dists/data/Release
  78  http://neuro.debian.net/debian/dists/dapper/Release
  79  http://neuro.debian.net/debian/dists/gutsy/Release
  80  http://neuro.debian.net/debian/dists/hardy/Release
  81  http://neuro.debian.net/debian/dists/intrepid/Release
  82  http://neuro.debian.net/debian/dists/jaunty/Release
  83  http://neuro.debian.net/debian/dists/karmic/Release
  84  http://neuro.debian.net/debian/dists/lucid/Release
  85  http://neuro.debian.net/debian/dists/maverick/Release
  86  http://neuro.debian.net/debian/dists/natty/Release
  87  http://neuro.debian.net/debian/dists/etch/Release
  88  http://neuro.debian.net/debian/dists/lenny/Release
  89  http://neuro.debian.net/debian/dists/squeeze/Release
  90  http://neuro.debian.net/debian/dists/wheezy/Release
  91  http://neuro.debian.net/debian/dists/sid/Release
  92
  93 [release codenames]
  94 # the 'data' entry should not be changed, as this exact setting also serves as
  95 # a test condition in the DDE code
  96 data = Datasets (data)
  97 etch = Debian GNU/Linux 4.0 (etch)
  98 lenny = Debian GNU/Linux 5.0 (lenny)
  99 squeeze = Debian GNU/Linux 6.0 (squeeze)
 100 wheezy = Debian testing (wheezy)
 101 sid = Debian unstable (sid)
 102 # EOL: May 12 2011 (Desktop) April 2013 (Server)
 103 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
 104 # EOL: Oct 23 2010
 105 jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
 106 # EOL: April 2011
 107 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
 108 # EOL: April 2013 (Desktop) April 2015 (Server)
 109 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
 110 # EOL: April 2012
 111 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
 112 # EOL: October 2012
 113 natty = Ubuntu 11.04 "Natty Narwhal" (natty)
 114 # EOL: April 2013
 115 oneiric = Upcoming Ubuntu 11.10 "Oneiric Ocelot" (oneiric)
 116
 117 [release backport ids]
 118 # the purpose of these ids is to have version suffixes for backported packages
 119 # that allow proper sorting (upgradability) across distribution releases
 120 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 121 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 122 data = nd
 123 etch = nd40
 124 lenny = nd50
 125 squeeze = nd60
 126 wheezy = nd70
 127 sid = nd
 128 hardy = nd08.04
 129 intrepid = nd08.10
 130 jaunty = nd09.04
 131 karmic = nd09.10
 132 lucid = nd10.04
 133 maverick = nd10.10
 134 natty = nd11.04
 135 oneiric = nd11.10
 136
 137 [nitrc ids]
 138 afni = 23
 139 ants = 130
 140 camino = 253
 141 caret = 34
 142 connectomeviewer = 355
 143 dicomnifti = 218
 144 fsl = 25
 145 fslview = 25
 146 gifti-bin = 75
 147 imagej = 256
 148 itksnap = 110
 149 jist = 228
 150 libminc-dev = 129
 151 libgiftiio-dev = 75
 152 libnifti2 = 26
 153 libnifti-dev = 26
 154 matlab-spm8 = 24
 155 minc-tools = 129
 156 mipav = 70
 157 mitools = 153
 158 mricron = 152
 159 mrtrix = 128
 160 nifti-bin = 26
 161 odin = 153
 162 python-mvpa = 162
 163 python-nipype = 325
 164 python-surfer = 517
 165 python-pyxnat = 453
 166 slicer = 50
 167 spm8 = 24
 168 voxbo = 73
 169 openmeeg = 514
 170