neurodebian.cfg

   1 [dde]
   2 pkgquery_url = http://dde.debian.net/dde/q/udd
   3
   4 [packages]
   5 # Packages listed in the following taskfiles will be featured on the website
   6 # _if_ they are also present in the repository
   7 select taskfiles =
   8  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
   9  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  10  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  11  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  12  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  13  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  14  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  15  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  16  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  17  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology
  18
  19 # Additional selection filter (similar to 'select taskfiles'), only listing
  20 # package names
  21 select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx
  22  r-cran-glmnet python-rpy2 python-nibabel-snapshot
  23  python-sklearn python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support
  24  svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban
  25  python-pandas python-skimage neurodebian numdiff nuitka pytables
  26  guacamole freeipmi
  27
  28 # Information about prospective packages to be imported from taskfiles
  29 prospective =
  30  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing
  31  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci
  32  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology
  33  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive
  34  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets
  35  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling
  36  svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics
  37  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging
  38  svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev
  39
  40 [blend package aliases]
  41 # alias a package name from a blend taskfile to an arbitray number of additional
  42 # package names -- if the original name should appear in the package list it has
  43 # to be added as an alias as well
  44 cctools = coop-computing-tools
  45 mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c
  46 eeglab = matlab-eeglab11 eeglab11-sampledata
  47 fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates
  48 fslview = fslview fslview-doc
  49 python-mvpa = python-mvpa python-mvpa2
  50 libgiftiio-dev = libgiftiio-dev gifti-bin
  51 openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1
  52 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0
  53 libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf
  54 spm8 = matlab-spm8 spm8-data spm8-doc
  55 libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect
  56 psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc
  57 openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg
  58 pandas = python-pandas
  59 pysurfer = python-surfer
  60 pyxnat = python-pyxnat
  61 openwalnut = openwalnut-qt4
  62 neurodebian = neurodebian-dev neurodebian-desktop neurodebian-keyring neurodebian-popularity-contest neurodebian-guest-additions
  63 pytables = python-tables
  64 isis = isis-utils libisis-core-dev python-isis libisis-ioplugins-common libisis-ioplugins-dicom libisis-qt4-dev
  65 guacamole = guacamole guacd libguac-dev libguac3 libguac-client-rdp guacamole-tomcat libguac-client-vnc0
  66
  67 [mirrors]
  68 au = http://mirror.aarnet.edu.au/pub/neurodebian
  69 de-md = http://apsy.gse.uni-magdeburg.de/debian
  70 de-v = http://nd.zetatech.org
  71 gr = http://neurobot.bio.auth.gr/neurodebian
  72 jp = http://neuroimaging.sakura.ne.jp/neurodebian
  73 ua = http://www.neuro.webdisk.com.ua
  74 us-ca = http://neurodeb.pirsquared.org
  75 us-nh = http://neuro.debian.net/debian
  76 us-tn = http://masi.vuse.vanderbilt.edu/neurodebian
  77
  78 [mirror names]
  79 au = Australia (AARNET)
  80 de-md = Germany (University of Magdeburg)
  81 de-v = Germany (Nikolaus Valentin Haenel, Vogtland)
  82 gr = Greece (Aristotle University of Thessaloniki)
  83 jp = Japan (Kiyotaka Nemoto)
  84 ua = Ukraine (Iaroslav Iurchenko)
  85 us-ca = USA-CA (Paul Ivanov, California)
  86 us-nh = USA-NH (Dartmouth College)
  87 us-tn = USA-TN (Vanderbilt)
  88
  89 [neurodebian]
  90 # Release files of all repositories to be contained in the website
  91 # Package info files for all these releases will be downloaded. A long list
  92 # of releases makes a website update a lot slower
  93 releases =
  94  http://neuro.debian.net/debian/dists/data/Release
  95  http://neuro.debian.net/debian/dists/hardy/Release
  96  http://neuro.debian.net/debian/dists/karmic/Release
  97  http://neuro.debian.net/debian/dists/lucid/Release
  98  http://neuro.debian.net/debian/dists/maverick/Release
  99  http://neuro.debian.net/debian/dists/natty/Release
 100  http://neuro.debian.net/debian/dists/oneiric/Release
 101  http://neuro.debian.net/debian/dists/precise/Release
 102  http://neuro.debian.net/debian/dists/squeeze/Release
 103  http://neuro.debian.net/debian/dists/wheezy/Release
 104  http://neuro.debian.net/debian/dists/sid/Release
 105
 106 [release codenames]
 107 # each item here will result in the respective release being advertised
 108 # on the website, i.e. sources.list being available and config form contains
 109 # a corresponding item -- please prune an entry when a release is no longer
 110 # supported
 111 # the 'data' entry should not be changed, as this exact setting also serves as
 112 # a test condition in the DDE code
 113 data = Datasets (data)
 114 #etch = Debian GNU/Linux 4.0 (etch)
 115 lenny = Debian GNU/Linux 5.0 (lenny)
 116 squeeze = Debian GNU/Linux 6.0 (squeeze)
 117 wheezy = Debian testing (wheezy)
 118 sid = Debian unstable (sid)
 119 # EOL: May 12 2011 (Desktop) April 2013 (Server)
 120 hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy)
 121 # EOL: Oct 23 2010
 122 #jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty)
 123 # EOL: April 2011
 124 karmic = Ubuntu 09.10 "Karmic Koala" (karmic)
 125 # EOL: April 2013 (Desktop) April 2015 (Server)
 126 lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid)
 127 # EOL: April 2012
 128 maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick)
 129 # EOL: October 2012
 130 natty = Ubuntu 11.04 "Natty Narwhal" (natty)
 131 # EOL: April 2013
 132 oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric)
 133 # EOL: April 2017 (LTS)
 134 precise = Ubuntu 12.04 LTS "Precise Pangolin" (precise)
 135
 136 [release backport ids]
 137 # the purpose of these ids is to have version suffixes for backported packages
 138 # that allow proper sorting (upgradability) across distribution releases
 139 # For Debian we'll use ndXX (where XX is the version of the Debian release,
 140 # e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX.
 141 data = nd
 142 etch = nd40
 143 lenny = nd50
 144 squeeze = nd60
 145 wheezy = nd70
 146 sid = nd
 147 hardy = nd08.04
 148 intrepid = nd08.10
 149 jaunty = nd09.04
 150 karmic = nd09.10
 151 lucid = nd10.04
 152 maverick = nd10.10
 153 natty = nd11.04
 154 oneiric = nd11.10
 155 precise = nd12.04
 156
 157 [nitrc ids]
 158 afni = 23
 159 ants = 130
 160 camino = 253
 161 caret = 34
 162 cmtk = 212
 163 connectomeviewer = 355
 164 dicomnifti = 218
 165 fsl = 25
 166 fslview = 25
 167 gifti-bin = 75
 168 imagej = 256
 169 itksnap = 110
 170 jist = 228
 171 libminc-dev = 129
 172 libgiftiio-dev = 75
 173 libnifti2 = 26
 174 libnifti-dev = 26
 175 matlab-spm8 = 24
 176 minc-tools = 129
 177 mipav = 70
 178 mitools = 153
 179 mricron = 152
 180 mrtrix = 128
 181 nifti-bin = 26
 182 odin = 153
 183 python-mvpa = 162
 184 python-nipype = 325
 185 python-surfer = 517
 186 python-pyxnat = 453
 187 slicer = 50
 188 spm8 = 24
 189 voxbo = 73
 190 openmeeg = 514
 191