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mothur.git
2009-06-14 pschlossmerged pat's trim seqs edits with sarah's major overhau... commit | commitdiff | tree | snapshot
2009-06-12 westcottbroke up globaldata and moved error checking and help... commit | commitdiff | tree | snapshot
2009-06-08 westcottgot rid of extra temp files in dist.seqs commit | commitdiff | tree | snapshot
2009-06-08 westcottadded help for heatmap.sim commit | commitdiff | tree | snapshot
2009-06-08 westcottadded heatmap.sim command and changed heatmap to heatma... commit | commitdiff | tree | snapshot
2009-06-08 pschlossfixed how seq.dists divides the matrix for multiple... commit | commitdiff | tree | snapshot
2009-06-08 pschlossadded some features to trim.seqs commit | commitdiff | tree | snapshot
2009-06-08 westcottdist.seqs can now use n processors, and only outputs... commit | commitdiff | tree | snapshot
2009-06-07 pschlossmodified trim.seqs command commit | commitdiff | tree | snapshot
2009-06-06 pschlossadded trim.seqs command commit | commitdiff | tree | snapshot
2009-06-06 pschlossadded reverse.seqs command commit | commitdiff | tree | snapshot
2009-06-05 westcottline and label no longer persist between commands.... commit | commitdiff | tree | snapshot
2009-06-04 pschlossremove some files commit | commitdiff | tree | snapshot
2009-06-04 westcottremoved readseqs, readfasta, readnexus, readclustal... commit | commitdiff | tree | snapshot
2009-06-04 pschlossmodified filter.seqs to not store all seqs in memory... commit | commitdiff | tree | snapshot
2009-06-04 pschloss*** empty log message *** commit | commitdiff | tree | snapshot
2009-06-04 westcottfixed some bugs commit | commitdiff | tree | snapshot
2009-06-04 pschlosspat's edits of screen.seqs and summary.seqs commit | commitdiff | tree | snapshot
2009-06-03 pschlossfixed a bug in calculating the # of ambig bases commit | commitdiff | tree | snapshot
2009-06-03 pschlossadded screen.seqs command - pds commit | commitdiff | tree | snapshot
2009-06-03 westcottadded get.rabund and get.sabund command and fixed bug... commit | commitdiff | tree | snapshot
2009-06-03 pschlossaddition of summary.seq command [pds] commit | commitdiff | tree | snapshot
2009-06-02 westcottallow user to input quit instead of quit() commit | commitdiff | tree | snapshot
2009-06-02 westcottadded smart distance feature and optimized all commands... commit | commitdiff | tree | snapshot
2009-06-01 westcottfixed bug for windows users with read.dist commit | commitdiff | tree | snapshot
2009-06-01 westcott*** empty log message *** commit | commitdiff | tree | snapshot
2009-05-27 westcottfixed multiple bugs for 1.4 release commit | commitdiff | tree | snapshot
2009-05-24 pschlossThis contains Pat's bug fixes and updates. It represen... commit | commitdiff | tree | snapshot
2009-05-22 westcottchanged defaults for filter.seqs() commit | commitdiff | tree | snapshot
2009-05-22 westcottchanged defaults in allign.seqs command commit | commitdiff | tree | snapshot
2009-05-21 westcottfixed bugs commit | commitdiff | tree | snapshot
2009-05-21 westcottmodified bin.seqs and get.oturep commands to include... commit | commitdiff | tree | snapshot
2009-05-21 westcottadded ability to put # in front of any line in the... commit | commitdiff | tree | snapshot
2009-05-21 westcottfixed Thomas' calculators commit | commitdiff | tree | snapshot
2009-05-21 westcottfixed blast code path problem commit | commitdiff | tree | snapshot
2009-05-21 westcottadded dist.shared command commit | commitdiff | tree | snapshot
2009-05-20 westcottadded get.repseqs command, started matrix output command commit | commitdiff | tree | snapshot
2009-05-18 westcottadded shen calculator commit | commitdiff | tree | snapshot
2009-05-18 westcottadded shen calculator commit | commitdiff | tree | snapshot
2009-05-18 westcottadded help for alignment code and thomas' calcs to... commit | commitdiff | tree | snapshot
2009-05-18 westcottadded boneh, efron, and solow calculators commit | commitdiff | tree | snapshot
2009-05-18 westcottadded alignment code commit | commitdiff | tree | snapshot
2009-05-15 westcottfixed if defined in dist.seqs command commit | commitdiff | tree | snapshot
2009-05-15 westcottfixed memory leak in collect.shared() commit | commitdiff | tree | snapshot
2009-05-15 westcottspeed up rarefaction.shared commit | commitdiff | tree | snapshot
2009-05-15 westcottfixed bug in heatmap commit | commitdiff | tree | snapshot
2009-05-14 westcottfixed memory leak in rarefact commit | commitdiff | tree | snapshot
2009-05-14 westcottfixed bug in venn command commit | commitdiff | tree | snapshot
2009-05-13 westcottchanged name of distance command to dist.seqs commit | commitdiff | tree | snapshot
2009-05-13 westcottchanged all shared commands so that they read the share... commit | commitdiff | tree | snapshot
2009-05-13 westcottfixed bug with getting sharedrabunds for venn, heatmap... commit | commitdiff | tree | snapshot
2009-05-12 westcottadded distance command and filterseqs commit | commitdiff | tree | snapshot
2009-05-08 westcottaltered venn command to make use of sharedchao for... commit | commitdiff | tree | snapshot
2009-05-08 ryabinfilterseqscommand added commit | commitdiff | tree | snapshot
2009-05-07 westcottfixed concensus command and modified tree class so... commit | commitdiff | tree | snapshot
2009-05-04 ryabin*** empty log message *** commit | commitdiff | tree | snapshot
2009-05-04 westcottfixed xp user bug with rarefact commands and cluster... commit | commitdiff | tree | snapshot
2009-05-04 westcottadded concensus command and updated calcs commit | commitdiff | tree | snapshot
2009-05-04 westcottadded concensus command and updated calcs commit | commitdiff | tree | snapshot
2009-05-04 westcottadded concensus command commit | commitdiff | tree | snapshot
2009-04-24 pschlossThis is mothur v 1.2.0 - the April ~24, 2009 release commit | commitdiff | tree | snapshot
2009-04-23 pschlossmore calculator edits and added coverage and whittaker commit | commitdiff | tree | snapshot
2009-04-22 pschlossmodified some calculators and other stuff - pds commit | commitdiff | tree | snapshot
2009-04-22 westcottchanged heatmap and venn command to use vector of share... commit | commitdiff | tree | snapshot
2009-04-21 westcottbroke apart read matrix file commit | commitdiff | tree | snapshot
2009-04-21 westcottfixed bug with get.oturep and fixed problem with errorc... commit | commitdiff | tree | snapshot
2009-04-21 westcottfixed bug with parsimony(groups=all) and unifrac.unweig... commit | commitdiff | tree | snapshot
2009-04-21 westcottfixed bug in venn command which caused error when user... commit | commitdiff | tree | snapshot
2009-04-20 pschlosspds fixes of heatmap and some other minor stuff commit | commitdiff | tree | snapshot
2009-04-17 westcottadded bootstrap.shared command and fixed some bugs... commit | commitdiff | tree | snapshot
2009-04-14 westcottremoved "shared" from some of the calculator names... commit | commitdiff | tree | snapshot
2009-04-14 pschloss*** empty log message *** commit | commitdiff | tree | snapshot
2009-04-14 westcottadded log10 and log2 scalers for heatmap commit | commitdiff | tree | snapshot
2009-04-14 westcottstarted shared utilities, updates to venn and heatmap... commit | commitdiff | tree | snapshot
2009-04-08 westcottfixed bug in read.tree updates help and validparameters... commit | commitdiff | tree | snapshot
2009-04-06 westcottadded get.oturep command commit | commitdiff | tree | snapshot
2009-04-06 westcottfixed memory leak in parsimony calculator and added... commit | commitdiff | tree | snapshot
2009-04-03 westcottvenn command with up to 4 groups using sharedsobs,... commit | commitdiff | tree | snapshot
2009-04-02 westcottvenn command with up to 4 groups commit | commitdiff | tree | snapshot
2009-03-31 westcottstarted venn command commit | commitdiff | tree | snapshot
2009-03-30 ryabinFixed validParameter() method so line parameter can... commit | commitdiff | tree | snapshot
2009-03-30 westcottmade sorting optional but sort by default, in case... commit | commitdiff | tree | snapshot
2009-03-30 westcottadded sort to heatmap to put shared otus at the top... commit | commitdiff | tree | snapshot
2009-03-27 westcottfixed reference issue commit | commitdiff | tree | snapshot
2009-03-27 westcottadded heatmap command commit | commitdiff | tree | snapshot
2009-03-27 westcottadded heatmap command commit | commitdiff | tree | snapshot
2009-03-27 ryabinadded the Calculators Thomas made in the fall. Added... commit | commitdiff | tree | snapshot
2009-03-27 ryabinadded the Calculators Thomas made in the fall. Added... commit | commitdiff | tree | snapshot
2009-03-26 westcottheatmap commit | commitdiff | tree | snapshot
2009-03-25 westcottstarted heatmap command commit | commitdiff | tree | snapshot
2009-03-24 westcottadded sharedbraycurtis, sharedmorisirahorn, sharedkulcz... commit | commitdiff | tree | snapshot
2009-03-23 westcottadded sharedochiai and sharedanderberg calculators commit | commitdiff | tree | snapshot
2009-03-23 westcottfixed libshuff signif. values commit | commitdiff | tree | snapshot
2009-03-23 westcottput back no command and worked on libshuff commit | commitdiff | tree | snapshot
2009-03-20 westcottremoved no command because it is never called now that... commit | commitdiff | tree | snapshot
2009-03-20 westcottdocumentation commit | commitdiff | tree | snapshot
2009-03-19 westcottfixed memory leak globaldata container structures,... commit | commitdiff | tree | snapshot
2009-03-19 westcottfixed memory leak of groupmap in reads commit | commitdiff | tree | snapshot
2009-03-19 westcottupdated errorchecking so it checks if the parameter... commit | commitdiff | tree | snapshot
2009-03-19 westcottlibshuff and updated help to include libshuff and modif... commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches