git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2009-05-15	westcott	speed up rarefaction.shared	commit \| commitdiff \| tree \| snapshot
2009-05-15	westcott	fixed bug in heatmap	commit \| commitdiff \| tree \| snapshot
2009-05-14	westcott	fixed memory leak in rarefact	commit \| commitdiff \| tree \| snapshot
2009-05-14	westcott	fixed bug in venn command	commit \| commitdiff \| tree \| snapshot
2009-05-13	westcott	changed name of distance command to dist.seqs	commit \| commitdiff \| tree \| snapshot
2009-05-13	westcott	changed all shared commands so that they read the share...	commit \| commitdiff \| tree \| snapshot
2009-05-13	westcott	fixed bug with getting sharedrabunds for venn, heatmap...	commit \| commitdiff \| tree \| snapshot
2009-05-12	westcott	added distance command and filterseqs	commit \| commitdiff \| tree \| snapshot
2009-05-08	westcott	altered venn command to make use of sharedchao for...	commit \| commitdiff \| tree \| snapshot
2009-05-08	ryabin	filterseqscommand added	commit \| commitdiff \| tree \| snapshot
2009-05-07	westcott	fixed concensus command and modified tree class so...	commit \| commitdiff \| tree \| snapshot
2009-05-04	ryabin	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-05-04	westcott	fixed xp user bug with rarefact commands and cluster...	commit \| commitdiff \| tree \| snapshot
2009-05-04	westcott	added concensus command and updated calcs	commit \| commitdiff \| tree \| snapshot
2009-05-04	westcott	added concensus command and updated calcs	commit \| commitdiff \| tree \| snapshot
2009-05-04	westcott	added concensus command	commit \| commitdiff \| tree \| snapshot
2009-04-24	pschloss	This is mothur v 1.2.0 - the April ~24, 2009 release	commit \| commitdiff \| tree \| snapshot
2009-04-23	pschloss	more calculator edits and added coverage and whittaker	commit \| commitdiff \| tree \| snapshot
2009-04-22	pschloss	modified some calculators and other stuff - pds	commit \| commitdiff \| tree \| snapshot
2009-04-22	westcott	changed heatmap and venn command to use vector of share...	commit \| commitdiff \| tree \| snapshot
2009-04-21	westcott	broke apart read matrix file	commit \| commitdiff \| tree \| snapshot
2009-04-21	westcott	fixed bug with get.oturep and fixed problem with errorc...	commit \| commitdiff \| tree \| snapshot
2009-04-21	westcott	fixed bug with parsimony(groups=all) and unifrac.unweig...	commit \| commitdiff \| tree \| snapshot
2009-04-21	westcott	fixed bug in venn command which caused error when user...	commit \| commitdiff \| tree \| snapshot
2009-04-20	pschloss	pds fixes of heatmap and some other minor stuff	commit \| commitdiff \| tree \| snapshot
2009-04-17	westcott	added bootstrap.shared command and fixed some bugs...	commit \| commitdiff \| tree \| snapshot
2009-04-14	westcott	removed "shared" from some of the calculator names...	commit \| commitdiff \| tree \| snapshot
2009-04-14	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-04-14	westcott	added log10 and log2 scalers for heatmap	commit \| commitdiff \| tree \| snapshot
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	commit \| commitdiff \| tree \| snapshot
2009-04-08	westcott	fixed bug in read.tree updates help and validparameters...	commit \| commitdiff \| tree \| snapshot
2009-04-06	westcott	added get.oturep command	commit \| commitdiff \| tree \| snapshot
2009-04-06	westcott	fixed memory leak in parsimony calculator and added...	commit \| commitdiff \| tree \| snapshot
2009-04-03	westcott	venn command with up to 4 groups using sharedsobs,...	commit \| commitdiff \| tree \| snapshot
2009-04-02	westcott	venn command with up to 4 groups	commit \| commitdiff \| tree \| snapshot
2009-03-31	westcott	started venn command	commit \| commitdiff \| tree \| snapshot
2009-03-30	ryabin	Fixed validParameter() method so line parameter can...	commit \| commitdiff \| tree \| snapshot
2009-03-30	westcott	made sorting optional but sort by default, in case...	commit \| commitdiff \| tree \| snapshot
2009-03-30	westcott	added sort to heatmap to put shared otus at the top...	commit \| commitdiff \| tree \| snapshot
2009-03-27	westcott	fixed reference issue	commit \| commitdiff \| tree \| snapshot
2009-03-27	westcott	added heatmap command	commit \| commitdiff \| tree \| snapshot
2009-03-27	westcott	added heatmap command	commit \| commitdiff \| tree \| snapshot
2009-03-27	ryabin	added the Calculators Thomas made in the fall. Added...	commit \| commitdiff \| tree \| snapshot
2009-03-27	ryabin	added the Calculators Thomas made in the fall. Added...	commit \| commitdiff \| tree \| snapshot
2009-03-26	westcott	heatmap	commit \| commitdiff \| tree \| snapshot
2009-03-25	westcott	started heatmap command	commit \| commitdiff \| tree \| snapshot
2009-03-24	westcott	added sharedbraycurtis, sharedmorisirahorn, sharedkulcz...	commit \| commitdiff \| tree \| snapshot
2009-03-23	westcott	added sharedochiai and sharedanderberg calculators	commit \| commitdiff \| tree \| snapshot
2009-03-23	westcott	fixed libshuff signif. values	commit \| commitdiff \| tree \| snapshot
2009-03-23	westcott	put back no command and worked on libshuff	commit \| commitdiff \| tree \| snapshot
2009-03-20	westcott	removed no command because it is never called now that...	commit \| commitdiff \| tree \| snapshot
2009-03-20	westcott	documentation	commit \| commitdiff \| tree \| snapshot
2009-03-19	westcott	fixed memory leak globaldata container structures,...	commit \| commitdiff \| tree \| snapshot
2009-03-19	westcott	fixed memory leak of groupmap in reads	commit \| commitdiff \| tree \| snapshot
2009-03-19	westcott	updated errorchecking so it checks if the parameter...	commit \| commitdiff \| tree \| snapshot
2009-03-19	westcott	libshuff and updated help to include libshuff and modif...	commit \| commitdiff \| tree \| snapshot
2009-03-18	westcott	working on libshuff	commit \| commitdiff \| tree \| snapshot
2009-03-16	westcott	added nseqs and sharednseqs calculators, removed excess...	commit \| commitdiff \| tree \| snapshot
2009-03-10	westcott	working on libshuff	commit \| commitdiff \| tree \| snapshot
2009-03-09	pschloss	changed the ending of the unique fasta sequence file...	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	added abs() to weighted and unweighted to account for...	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed bug in read.tree	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed bug in summary.shared for groups	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed bug with line and label parameters and added...	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	deleted read.shared command and added its functionality...	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	added ability for user to select which groups to analyz...	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed outputs in unifrac to look the same	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed memory issue with cluster command	commit \| commitdiff \| tree \| snapshot
2009-03-09	westcott	fixed valid parameters to include shared parameter...	commit \| commitdiff \| tree \| snapshot
2009-03-07	pschloss	mucked around some with the output in the unifrac.weigh...	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	got rid of rd_parsimony ext.	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	fixed bug wit unifrac files	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	added full matrix files	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	fixed bug in random option of parsimony()	commit \| commitdiff \| tree \| snapshot
2009-03-06	pschloss	fixed parsimony bug	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	changed format of output in unifrac and parsimony files	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	fixed bug in read tree	commit \| commitdiff \| tree \| snapshot
2009-03-06	westcott	fixed bug in read tree	commit \| commitdiff \| tree \| snapshot
2009-03-05	westcott	working on readtree	commit \| commitdiff \| tree \| snapshot
2009-03-04	westcott	unifrac.weighted	commit \| commitdiff \| tree \| snapshot
2009-03-03	westcott	parsimony output changed	commit \| commitdiff \| tree \| snapshot
2009-03-03	westcott	unifrac.unweighted command changes	commit \| commitdiff \| tree \| snapshot
2009-03-02	westcott	worked on unifrac.unweighted()	commit \| commitdiff \| tree \| snapshot
2009-03-02	westcott	fixed bug in unweighted	commit \| commitdiff \| tree \| snapshot
2009-02-27	westcott	fixed parsimony with groups and worked on unifrac.unwei...	commit \| commitdiff \| tree \| snapshot
2009-02-26	westcott	parsimony with groups	commit \| commitdiff \| tree \| snapshot
2009-02-26	westcott	parsimony with groups	commit \| commitdiff \| tree \| snapshot
2009-02-26	pschloss	fix weighted unifrac bug in findIndex and randomize...	commit \| commitdiff \| tree \| snapshot
2009-02-26	westcott	weightedcommand	commit \| commitdiff \| tree \| snapshot
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree \| snapshot
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree \| snapshot
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree \| snapshot
2009-02-24	westcott	test	commit \| commitdiff \| tree \| snapshot
2009-02-24	pschloss	print tree debugger	commit \| commitdiff \| tree \| snapshot
2009-02-24	westcott	parsimony fix	commit \| commitdiff \| tree \| snapshot
2009-02-23	westcott	fixed parsimony for groups	commit \| commitdiff \| tree \| snapshot
2009-02-23	westcott	fixed parsimony for groups	commit \| commitdiff \| tree \| snapshot
2009-02-23	westcott	fixed unweighted calculator	commit \| commitdiff \| tree \| snapshot
2009-02-20	westcott	fixed unweighted calculator	commit \| commitdiff \| tree \| snapshot
2009-02-19	westcott	added mothur.h and fixed includes in many files	commit \| commitdiff \| tree \| snapshot
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