| 2010-09-30 |
westcott | added parse.fastaq command, added permute option to... |
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| 2010-09-28 |
westcott | added distance option to summary.shared |
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| 2010-09-24 |
westcott | added get.lineage and remove.lineage commands |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
westcott | fixed order of unifrac commands so that it matches... |
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| 2010-09-23 |
westcott | added cluster.fragments command as well as the nseqs... |
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| 2010-09-21 |
westcott | added mothur executable to cvs |
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| 2010-09-21 |
westcott | added split.groups command |
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| 2010-09-20 |
westcott | changed how we name the make.group groups file, and... |
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| 2010-09-17 |
westcott | bug fixes |
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| 2010-09-17 |
westcott | bug fixes |
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| 2010-09-17 |
westcott | working on megastats |
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| 2010-09-16 |
westcott | initial add of metastats |
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| 2010-09-15 |
westcott | added normalize.shared command |
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| 2010-09-15 |
westcott | added normalize.shared command |
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| 2010-09-15 |
westcott | paralellized summary.shared |
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| 2010-09-09 |
westcott | done testing 1.13.0 |
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| 2010-09-08 |
westcott | testing 1.13.0 |
commit | commitdiff | tree | snapshot |
| 2010-09-04 |
westcott | working on testing for 1.13 |
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| 2010-09-03 |
westcott | working on testing |
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| 2010-09-01 |
westcott | unifrac parallelization done, changed dist.seqs output... |
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| 2010-09-01 |
westcott | working on unifrac parallelization |
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| 2010-08-31 |
westcott | working on parallelizing unifrac.unweighted. |
commit | commitdiff | tree | snapshot |
| 2010-08-31 |
westcott | working on parallelizing unifrac.weighted. |
commit | commitdiff | tree | snapshot |
| 2010-08-30 |
westcott | sped up unifrac unweighted. |
commit | commitdiff | tree | snapshot |
| 2010-08-30 |
westcott | sped up unifrac weighted. |
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| 2010-08-27 |
westcott | made read.tree not require a groupfile, if one is not... |
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| 2010-08-27 |
westcott | fixed phylo.diversity |
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| 2010-08-27 |
westcott | fixed phylo.diversity |
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| 2010-08-26 |
pschloss | changes to read.tree |
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| 2010-08-26 |
pschloss | modified splitAtComma in mothurout command |
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| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled share... |
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| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled share... |
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| 2010-08-26 |
pschloss | changes to read.otu(list/shared) - took out substr... |
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| 2010-08-26 |
pschloss | took out debugging output code from distance calculators |
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| 2010-08-24 |
westcott | added sharedRabundFloatVector class to represent the... |
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| 2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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| 2010-08-23 |
westcott | filter.seqs bug change |
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| 2010-08-23 |
westcott | numSeqs passing fix |
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| 2010-08-23 |
pschloss | added a few evenness calculators and fixed a couple... |
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| 2010-08-20 |
pschloss | fixed filterseqscommand bug where trump wasn't being... |
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| 2010-08-20 |
westcott | pre.cluster |
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| 2010-08-20 |
westcott | pre.cluster |
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| 2010-08-20 |
westcott | modified precluster to use less memory. |
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| 2010-08-20 |
westcott | changed file divide for trim.seqs |
commit | commitdiff | tree | snapshot |
| 2010-08-19 |
westcott | changed how we break up the files on parallelized comma... |
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| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and... |
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| 2010-08-12 |
pschloss | fixed a trimming bug in sffinfo which occurs when the... |
commit | commitdiff | tree | snapshot |
| 2010-08-12 |
pschloss | fixed int bug in simpson.cpp |
commit | commitdiff | tree | snapshot |
| 2010-08-06 |
westcott | added oldfasta and column parameter to dist.seqs so... |
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| 2010-08-06 |
westcott | added versioning info to all shortcut files mothur... |
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| 2010-08-05 |
westcott | added summary, collect, and scale parameters to phylo... |
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| 2010-08-05 |
westcott | fixed bug with creation of .tree.sum file |
commit | commitdiff | tree | snapshot |
| 2010-08-03 |
westcott | added countgaps parameter to chop.seqs command |
commit | commitdiff | tree | snapshot |
| 2010-08-03 |
westcott | modified the engine to extract the path of mothur execu... |
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| 2010-08-02 |
westcott | fixed bug with phylo.diversity. not calculating as... |
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| 2010-07-30 |
westcott | changes for 1.12.2 |
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| 2010-07-30 |
westcott | changes for 1.12.2 |
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| 2010-07-29 |
pschloss | another attempt to fix sffinfo |
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| 2010-07-29 |
westcott | 1.12.1 |
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| 2010-07-29 |
pschloss | another pds fix to sffinfo |
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| 2010-07-29 |
pschloss | another pds fix to sffinfo |
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| 2010-07-29 |
pschloss | pds' small change to sffinfo |
commit | commitdiff | tree | snapshot |
| 2010-07-28 |
westcott | some bug fixes |
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| 2010-07-28 |
pschloss | pat's slight modifications to trim.seqs |
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| 2010-07-23 |
westcott | 1.12.0 |
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| 2010-07-22 |
westcott | fixes while testing 1.12.0 |
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| 2010-07-20 |
westcott | added tempdefault to set.dir and fixed bug with padding... |
commit | commitdiff | tree | snapshot |
| 2010-07-19 |
westcott | added ordergroup parameter to read.otu |
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| 2010-07-19 |
pschloss | pat's updates on 7/19/10 |
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| 2010-07-19 |
westcott | added compile time default path |
commit | commitdiff | tree | snapshot |
| 2010-07-19 |
westcott | added fasta, qfile, trim, accnos and sfftxt parameter... |
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| 2010-07-15 |
westcott | sffinfo command is working |
commit | commitdiff | tree | snapshot |
| 2010-07-15 |
westcott | sffinfo command is working |
commit | commitdiff | tree | snapshot |
| 2010-07-15 |
westcott | working on sffinfo |
commit | commitdiff | tree | snapshot |
| 2010-07-14 |
westcott | working on sffinfo command. |
commit | commitdiff | tree | snapshot |
| 2010-07-14 |
westcott | working on sffinfo command. |
commit | commitdiff | tree | snapshot |
| 2010-07-14 |
westcott | working on sffinfo command. |
commit | commitdiff | tree | snapshot |
| 2010-07-14 |
pschloss | pat's changes to trim.seqs |
commit | commitdiff | tree | snapshot |
| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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| 2010-07-07 |
pschloss | modified makefile and sensspeccommand files |
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| 2010-07-06 |
pschloss | sens.spec changes |
commit | commitdiff | tree | snapshot |
| 2010-07-06 |
westcott | fixed trim.seqs bug |
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| 2010-07-06 |
westcott | rechecking in |
commit | commitdiff | tree | snapshot |
| 2010-07-06 |
westcott | trim.seqs couts |
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| 2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer... |
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| 2010-06-28 |
westcott | added groups option to get.oturep command |
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| 2010-06-24 |
westcott | created blank accnos in chimera commands if no seqs... |
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| 2010-06-23 |
westcott | fixed bug with cluster class. when we added the change... |
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| 2010-06-23 |
westcott | fixed cluster.split with average method |
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| 2010-06-22 |
westcott | finished get.relabund command |
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| 2010-06-22 |
westcott | finished get.relabund command |
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| 2010-06-22 |
westcott | added mpi code to cluster.split command |
commit | commitdiff | tree | snapshot |
| 2010-06-22 |
westcott | added mpi code to cluster.split command |
commit | commitdiff | tree | snapshot |
| 2010-06-21 |
westcott | added degap.seqs command |
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| 2010-06-21 |
westcott | modified chimera commands to process multiple fasta... |
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| 2010-06-18 |
westcott | removed blast files generated by chimera.slayer, altere... |
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| 2010-06-18 |
westcott | fixed problem with trim.seqs writing over files if... |
commit | commitdiff | tree | snapshot |
| 2010-06-18 |
westcott | fixed problem with chimera.slayer realigner |
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| 2010-06-17 |
westcott | changes for 1.11 |
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| 2010-06-17 |
westcott | changes while testing 1.11 |
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