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2011-05-20	westcott	added path search for lookup file in shhh.seqs	commit \| commitdiff \| tree
2011-05-20	westcott	changed blastdb.cpp to no include sequence names in...	commit \| commitdiff \| tree
2011-05-20	westcott	finished adding the names option to trim.seqs	commit \| commitdiff \| tree
2011-05-18	westcott	added name option to trim.seqs	commit \| commitdiff \| tree
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	commit \| commitdiff \| tree
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	commit \| commitdiff \| tree
2011-05-18	westcott	fixed bug in chimera.uchime	commit \| commitdiff \| tree
2011-05-17	westcott	added parameter to chimera.uchime	commit \| commitdiff \| tree
2011-05-16	westcott	added chimera.uchime	commit \| commitdiff \| tree
2011-05-16	westcott	added chimera.uchime	commit \| commitdiff \| tree
2011-05-16	westcott	added chimera.uchime	commit \| commitdiff \| tree
2011-05-11	westcott	working on citations	commit \| commitdiff \| tree
2011-05-10	westcott	added citation function to commands	commit \| commitdiff \| tree
2011-05-10	westcott	added citation function to commands	commit \| commitdiff \| tree
2011-05-09	westcott	1.19.0	commit \| commitdiff \| tree
2011-05-09	westcott	1.19.0	commit \| commitdiff \| tree
2011-05-06	westcott	fixed template=self thing	commit \| commitdiff \| tree
2011-05-04	westcott	trim.seqs fix of gobble	commit \| commitdiff \| tree
2011-05-04	westcott	chimera.slayer	commit \| commitdiff \| tree
2011-05-04	westcott	chimera.slayer	commit \| commitdiff \| tree
2011-05-04	westcott	changes for chimera slayer using last column	commit \| commitdiff \| tree
2011-05-04	westcott	changes for chimera slayer	commit \| commitdiff \| tree
2011-05-04	westcott	changes for chimera slayer	commit \| commitdiff \| tree
2011-05-04	westcott	changes for chimera slayer	commit \| commitdiff \| tree
2011-05-03	westcott	maligner change	commit \| commitdiff \| tree
2011-05-03	westcott	fixed id match	commit \| commitdiff \| tree
2011-05-03	westcott	sped up realign	commit \| commitdiff \| tree
2011-05-03	westcott	changed defaults in slayer to minsnp=10 and realign=t	commit \| commitdiff \| tree
2011-05-03	westcott	fixed bug with realigner for chimera slayer	commit \| commitdiff \| tree
2011-05-03	westcott	fixed bug with realigner for chimera slayer	commit \| commitdiff \| tree
2011-05-02	westcott	modified chimera.slayer bootstrap to bump up to 1000...	commit \| commitdiff \| tree
2011-05-02	westcott	modified chimera.slayer bootstrap to bump up to 1000...	commit \| commitdiff \| tree
2011-05-02	westcott	modified chimera.slayer bootstrap to bump up to 1000...	commit \| commitdiff \| tree
2011-04-29	westcott	working on chimera.slayer	commit \| commitdiff \| tree
2011-04-29	westcott	working on chimera.slayer	commit \| commitdiff \| tree
2011-04-27	westcott	working on slayer bug	commit \| commitdiff \| tree
2011-04-26	westcott	added current as option is lists of file names, processors...	commit \| commitdiff \| tree
2011-04-26	westcott	blast queryName=templateSeq name bug	commit \| commitdiff \| tree
2011-04-26	westcott	* empty log message *	commit \| commitdiff \| tree
2011-04-25	westcott	minor bug in chimera maligner	commit \| commitdiff \| tree
2011-04-25	westcott	fixed ties issue in maligner getBlastSeqs	commit \| commitdiff \| tree
2011-04-19	westcott	finished chimera.slayer template=self change	commit \| commitdiff \| tree
2011-04-18	westcott	modified chimera.slayer template=self	commit \| commitdiff \| tree
2011-04-15	westcott	1.18.1	commit \| commitdiff \| tree
2011-04-11	westcott	1.18.0 - fixed make.shared abort issue	commit \| commitdiff \| tree
2011-04-11	westcott	1.18.0	commit \| commitdiff \| tree
2011-04-11	westcott	1.18.0	commit \| commitdiff \| tree
2011-04-11	westcott	fixed sub.sample groups bug	commit \| commitdiff \| tree
2011-04-08	westcott	fixed sub.sample so that it will eliminate samples...	commit \| commitdiff \| tree
2011-04-08	westcott	fixing bugs while testing	commit \| commitdiff \| tree
2011-04-07	westcott	fixed bug with tree reading	commit \| commitdiff \| tree
2011-04-06	westcott	changes while setting up test files	commit \| commitdiff \| tree
2011-04-06	westcott	added getCommandInfoCommand for gui	commit \| commitdiff \| tree
2011-04-06	westcott	added commandParameter class	commit \| commitdiff \| tree
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	commit \| commitdiff \| tree
2011-04-04	westcott	sped up the remove.seqs and remove.lineage and get...	commit \| commitdiff \| tree
2011-03-30	westcott	fixed problem with sffinfo that caused a file mismatch...	commit \| commitdiff \| tree
2011-03-22	westcott	fixed trim.seqs group counts by adding back in the...	commit \| commitdiff \| tree
2011-03-22	westcott	working on pca	commit \| commitdiff \| tree
2011-03-22	westcott	working on pca	commit \| commitdiff \| tree
2011-03-22	westcott	fixed clearcut version bug, added group count output...	commit \| commitdiff \| tree
2011-03-22	westcott	fixed clearcut version bug, added group count output...	commit \| commitdiff \| tree
2011-03-21	westcott	fixed get.lienage and remove.lineage bug with confidence...	commit \| commitdiff \| tree
2011-03-16	westcott	fixed catchall "clunky" names	commit \| commitdiff \| tree
2011-03-16	westcott	fixed the bug that caused mothur to choke on other...	commit \| commitdiff \| tree
2011-03-16	westcott	added set.current and get.current commands and modified...	commit \| commitdiff \| tree
2011-03-15	westcott	adding current file class	commit \| commitdiff \| tree
2011-03-15	westcott	adding current file class	commit \| commitdiff \| tree
2011-03-11	westcott	sped up align.seqs appending of files	commit \| commitdiff \| tree
2011-03-11	westcott	added summary outputs for align.check	commit \| commitdiff \| tree
2011-03-11	westcott	added namefile to align.check and added seqs from namefile...	commit \| commitdiff \| tree
2011-03-11	westcott	added namefile to summary.seqs	commit \| commitdiff \| tree
2011-03-07	westcott	trim.seqs fix	commit \| commitdiff \| tree
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfiles...	commit \| commitdiff \| tree
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfiles...	commit \| commitdiff \| tree
2011-03-04	westcott	bug fixes	commit \| commitdiff \| tree
2011-02-28	westcott	fixed unweighted command	commit \| commitdiff \| tree
2011-02-25	westcott	changed version and release date	commit \| commitdiff \| tree
2011-02-25	westcott	added root parameter to the unifrac commands so you...	commit \| commitdiff \| tree
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree
2011-02-18	westcott	fixed unifrac bug with multiple processors if numComps...	commit \| commitdiff \| tree
2011-02-15	westcott	finished anosim command	commit \| commitdiff \| tree
2011-02-15	westcott	working on anosim command	commit \| commitdiff \| tree
2011-02-15	westcott	finished the chimera.slayer split function	commit \| commitdiff \| tree
2011-02-15	westcott	fixed mpi version compile issue with chimera.slayer	commit \| commitdiff \| tree
2011-02-14	westcott	added make.fastq command	commit \| commitdiff \| tree
2011-02-14	westcott	fixed catchall PATH variable bug added trimera to chimera...	commit \| commitdiff \| tree
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree
2011-02-08	westcott	added [ERROR] flag if command aborts	commit \| commitdiff \| tree
2011-02-08	westcott	fixed homova command	commit \| commitdiff \| tree
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree
2011-02-07	westcott	adding license	commit \| commitdiff \| tree
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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