start adding debugging to trimoligos

diff --git a/trimoligos.cpp b/trimoligos.cpp
index 0f2a9cbb0e584ddfa393a53015b02b37ccfa3903..b17542af03cff138ba48103a1292ba88c4a75ab8 100644 (file)
--- a/trimoligos.cpp
+++ b/trimoligos.cpp
@@ -845,6 +845,7 @@ int TrimOligos::stripBarcode(Sequence& forwardSeq, Sequence& reverseSeq, Quality
 //*******************************************************************/
 int TrimOligos::stripPairedBarcode(Sequence& seq, QualityScores& qual, int& group){
     try {
+      m->debugOut("Stripping paired barcode");
         //look for forward barcode
         string rawSeq = seq.getUnaligned();
         int success = bdiffs + 1;      //guilty until proven innocent