test

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index 99893a92e841ee92e7cee26910f0a5d3f973e840..c5b5b5ba57b25f5f673d2c84c9d280e9ac7acd1b 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -386,7 +386,6 @@
                219C1DE11552C508004209F9 /* newcommandtemplate.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = newcommandtemplate.h; sourceTree = "<group>"; };
                219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getcoremicrobiomecommand.cpp; sourceTree = "<group>"; };
                219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getcoremicrobiomecommand.h; sourceTree = "<group>"; };
-               7E16B6F31695CB5C00C0DC4F /* pdsMakeContigs.1 */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text.man; name = pdsMakeContigs.1; path = pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1; sourceTree = "<group>"; };
                7E16B6F41695CB5C00C0DC4F /* main.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = main.cpp; path = pdsMakeContigs/pdsMakeContigs/main.cpp; sourceTree = "<group>"; };
                7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = refchimeratest.h; sourceTree = "<group>"; };
                7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = refchimeratest.cpp; sourceTree = "<group>"; };
@@ -1190,7 +1189,6 @@
                                A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */,
                                7E6BE10812F710D8007ADDBE /* refchimeratest.h */,
                                7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */,
-                               7E16B6F31695CB5C00C0DC4F /* pdsMakeContigs.1 */,
                                7E16B6F41695CB5C00C0DC4F /* main.cpp */,
                                A77410F514697C300098E6AC /* seqnoise.h */,
                                A77410F414697C300098E6AC /* seqnoise.cpp */,

diff --git a/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1 b/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1
deleted file mode 100644 (file)
index d07499e..0000000
--- a/pdsMakeContigs/pdsMakeContigs/pdsMakeContigs.1
+++ /dev/null
@@ -1,79 +0,0 @@
-.\"Modified from man(1) of FreeBSD, the NetBSD mdoc.template, and mdoc.samples.\r
-.\"See Also:\r
-.\"man mdoc.samples for a complete listing of options\r
-.\"man mdoc for the short list of editing options\r
-.\"/usr/share/misc/mdoc.template\r
-.Dd 1/2/13               \" DATE \r
-.Dt pdsMakeContigs 1      \" Program name and manual section number \r
-.Os Darwin\r
-.Sh NAME                 \" Section Header - required - don't modify \r
-.Nm pdsMakeContigs,\r
-.\" The following lines are read in generating the apropos(man -k) database. Use only key\r
-.\" words here as the database is built based on the words here and in the .ND line. \r
-.Nm Other_name_for_same_program(),\r
-.Nm Yet another name for the same program.\r
-.\" Use .Nm macro to designate other names for the documented program.\r
-.Nd This line parsed for whatis database.\r
-.Sh SYNOPSIS             \" Section Header - required - don't modify\r
-.Nm\r
-.Op Fl abcd              \" [-abcd]\r
-.Op Fl a Ar path         \" [-a path] \r
-.Op Ar file              \" [file]\r
-.Op Ar                   \" [file ...]\r
-.Ar arg0                 \" Underlined argument - use .Ar anywhere to underline\r
-arg2 ...                 \" Arguments\r
-.Sh DESCRIPTION          \" Section Header - required - don't modify\r
-Use the .Nm macro to refer to your program throughout the man page like such:\r
-.Nm\r
-Underlining is accomplished with the .Ar macro like this:\r
-.Ar underlined text .\r
-.Pp                      \" Inserts a space\r
-A list of items with descriptions:\r
-.Bl -tag -width -indent  \" Begins a tagged list \r
-.It item a               \" Each item preceded by .It macro\r
-Description of item a\r
-.It item b\r
-Description of item b\r
-.El                      \" Ends the list\r
-.Pp\r
-A list of flags and their descriptions:\r
-.Bl -tag -width -indent  \" Differs from above in tag removed \r
-.It Fl a                 \"-a flag as a list item\r
-Description of -a flag\r
-.It Fl b\r
-Description of -b flag\r
-.El                      \" Ends the list\r
-.Pp\r
-.\" .Sh ENVIRONMENT      \" May not be needed\r
-.\" .Bl -tag -width "ENV_VAR_1" -indent \" ENV_VAR_1 is width of the string ENV_VAR_1\r
-.\" .It Ev ENV_VAR_1\r
-.\" Description of ENV_VAR_1\r
-.\" .It Ev ENV_VAR_2\r
-.\" Description of ENV_VAR_2\r
-.\" .El                      \r
-.Sh FILES                \" File used or created by the topic of the man page\r
-.Bl -tag -width "/Users/joeuser/Library/really_long_file_name" -compact\r
-.It Pa /usr/share/file_name\r
-FILE_1 description\r
-.It Pa /Users/joeuser/Library/really_long_file_name\r
-FILE_2 description\r
-.El                      \" Ends the list\r
-.\" .Sh DIAGNOSTICS       \" May not be needed\r
-.\" .Bl -diag\r
-.\" .It Diagnostic Tag\r
-.\" Diagnostic informtion here.\r
-.\" .It Diagnostic Tag\r
-.\" Diagnostic informtion here.\r
-.\" .El\r
-.Sh SEE ALSO \r
-.\" List links in ascending order by section, alphabetically within a section.\r
-.\" Please do not reference files that do not exist without filing a bug report\r
-.Xr a 1 , \r
-.Xr b 1 ,\r
-.Xr c 1 ,\r
-.Xr a 2 ,\r
-.Xr b 2 ,\r
-.Xr a 3 ,\r
-.Xr b 3 \r
-.\" .Sh BUGS              \" Document known, unremedied bugs \r
-.\" .Sh HISTORY           \" Document history if command behaves in a unique manner
\ No newline at end of file