else if (method == "chimeracheck") { chimera = new ChimeraCheckRDP(fastafile, templatefile, outputDir); }
else if (method == "chimeraslayer") { chimera = new ChimeraSlayer(fastafile, templatefile); }
else { mothurOut("Not a valid method."); mothurOutEndLine(); return 0; }
else if (method == "chimeracheck") { chimera = new ChimeraCheckRDP(fastafile, templatefile, outputDir); }
else if (method == "chimeraslayer") { chimera = new ChimeraSlayer(fastafile, templatefile); }
else { mothurOut("Not a valid method."); mothurOutEndLine(); return 0; }