//default is wanted = 10% of total length
if (windowSizes[query] > length) {
mothurOut("You have slected a window larger than your sequence length after all filters, masks and trims have been done. I will use the default 10% of sequence length.");
windowSizes[query] = length / 10;
}else if (windowSizes[query] == 0) { windowSizes[query] = length / 10; }
//default is wanted = 10% of total length
if (windowSizes[query] > length) {
mothurOut("You have slected a window larger than your sequence length after all filters, masks and trims have been done. I will use the default 10% of sequence length.");
windowSizes[query] = length / 10;
}else if (windowSizes[query] == 0) { windowSizes[query] = length / 10; }