clean up makefile

diff --git a/makefile b/makefile
index c67f0ba6bd2d5a3baf675edef32fbd15679259fc..e1856af6a8997db44a42126d730e681f9d1ac8ba 100644 (file)
--- a/makefile
+++ b/makefile
@@ -25,20 +25,20 @@ CXXFLAGS += -O3
 ifeq  ($(strip $(64BIT_VERSION)),yes)
        #if you are using centos uncomment the following lines
        #CXX = g++44
-       
+
        #if you are a mac user use the following line
-       TARGET_ARCH += -arch x86_64
-       
+       #TARGET_ARCH += -arch x86_64
+
        #if you using cygwin to build Windows the following line
        #CXX = x86_64-w64-mingw32-g++
        #CC = x86_64-w64-mingw32-g++
        #FORTAN_COMPILER = x86_64-w64-mingw32-gfortran
-       #TARGET_ARCH += -m64 -static
+       #TARGET_ARCH += -m64 -static
 
        #if you are a linux user use the following line
-       #CXXFLAGS += -mtune=native -march=native 
-       
-       CXXFLAGS += -DBIT_VERSION 
+       CXXFLAGS += -mtune=native -march=native -g
+
+       CXXFLAGS += -DBIT_VERSION -std=gnu++11
 endif
 
 
@@ -91,18 +91,17 @@ OBJECTS+=$(patsubst %.f,%.o,$(wildcard *.f))
 
 mothur : fortranSource $(OBJECTS) uchime
        $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
-       
-       strip mothur
- 
+#      strip mothur
+
 uchime:
        cd uchime_src && ./mk && mv uchime .. && cd ..
-       
+
 fortranSource:
        ${FORTAN_COMPILER} -c $(FORTRAN_FLAGS) *.f
 
 install : mothur
 #      cp mothur ../Release/mothur
-       
+
 %.o : %.c %.h
        $(COMPILE.c) $(OUTPUT_OPTION) $<
 %.o : %.cpp %.h