changing command name classify.shared to classifyrf.shared

[mothur.git] / whittaker.cpp

diff --git a/whittaker.cpp b/whittaker.cpp
index 3b179111a854e934b6f9d05e231649796e5565a3..5ab1e5dd88eedb8e0fb0dbe52d0b42e0c61d3c44 100644 (file)
--- a/whittaker.cpp
+++ b/whittaker.cpp
@@ -23,17 +23,13 @@ EstOutput Whittaker::getValues(vector<SharedRAbundVector*> shared){
                        if(shared[1]->getAbundance(i) != 0){    countB++;       }               
                }
                
-               data[0] = 2*sTotal/(float)(countA+countB)-1;
+               data[0] = 2-2*sTotal/(float)(countA+countB);
                return data;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Whittaker class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               m->errorOut(e, "Whittaker", "getValues");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Whittaker class function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
-/***********************************************************************/
\ No newline at end of file
+/***********************************************************************/