moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / weightedlinkage.cpp

diff --git a/weightedlinkage.cpp b/weightedlinkage.cpp
deleted file mode 100644 (file)
index 0851bd7..0000000
--- a/weightedlinkage.cpp
+++ /dev/null
@@ -1,56 +0,0 @@
-#ifndef WEIGHTEDLINKAGE_H
-#define WEIGHTEDLINKAGE_H
-
-
-#include "mothur.h"
-#include "cluster.hpp"
-#include "rabundvector.hpp"
-#include "sparsematrix.hpp"
-
-/* This class implements the WPGMA, weighted average neighbor clustering algorithm */
-
-/***********************************************************************/
-
-WeightedLinkage::WeightedLinkage(RAbundVector* rav, ListVector* lv, SparseMatrix* dm, float c, string s) :
-       Cluster(rav, lv, dm, c, s)
-{
-       saveRow = -1;
-       saveCol = -1;
-}
-
-
-/***********************************************************************/
-//This function returns the tag of the method.
-string WeightedLinkage::getTag() {
-       return("wn");
-}
-
-
-/***********************************************************************/
-//This function updates the distance based on the average linkage method.
-bool WeightedLinkage::updateDistance(MatData& colCell, MatData& rowCell) {
-       try {
-               if ((saveRow != smallRow) || (saveCol != smallCol)) {
-//                     rowBin = rabund->get(smallRow);
-//                     colBin = rabund->get(smallCol);
-//                     totalBin = rowBin + colBin;
-                       saveRow = smallRow;
-                       saveCol = smallCol;
-               }
-               
-               colCell->dist = (colCell->dist + rowCell->dist) / 2.0;
-               
-               return(true);
-       }
-       catch(exception& e) {
-               m->errorOut(e, "WeightedLinkage", "updateDistance");
-               exit(1);
-       }
-}
-
-/***********************************************************************/
-
-
-/***********************************************************************/
-
-#endif