major change to the tree class to use the count table class instead of tree map....

[mothur.git] / weighted.h

diff --git a/weighted.h b/weighted.h
index 180409ce2dbad5da67b570a7ca4a3666c61ae3b3..d4082fe9c82a7aeeb41aeaad62f016d0ec588d4d 100644 (file)
--- a/weighted.h
+++ b/weighted.h
@@ -12,7 +12,7 @@
  */
 
 #include "treecalculator.h"
-#include "treemap.h"
+#include "counttable.h"
 
 /***********************************************************************/
 
@@ -41,8 +41,8 @@ class Weighted : public TreeCalculator  {
                map< vector<string>, set<int> > rootForGrouping;  //maps a grouping combo to the root for that combo
                bool includeRoot;
                
-               EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
-               EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
+               EstOutput driver(Tree*, vector< vector<string> >, int, int, CountTable*); 
+               EstOutput createProcesses(Tree*, vector< vector<string> >, CountTable*);
                double getLengthToRoot(Tree*, int, string, string);
 };