added parameter to chimera.uchime

[mothur.git] / viterbifast.cpp

diff --git a/viterbifast.cpp b/viterbifast.cpp
index 2b201741448e5bad79aa93b7c9887b4cdf2bda42..3f3fc970a2075a248bdace6b599773e04a84db01 100644 (file)
--- a/viterbifast.cpp
+++ b/viterbifast.cpp
@@ -1,9 +1,11 @@
+//uchime by Robert C. Edgar http://drive5.com/uchime This code is donated to the public domain.
+
 #include "dp.h"
 #include "out.h"
 #include "evalue.h"
 
 #define CMP_SIMPLE     0
-\r
+
 #if    SAVE_FAST
 static Mx<float> g_MxDPM;
 static Mx<float> g_MxDPD;
@@ -66,21 +68,21 @@ static void AllocSave(unsigned LA, unsigned LB)
        g_DPDSimple = g_DPDSimpleMx->GetData();
        g_DPISimple = g_DPISimpleMx->GetData();
 #endif
-       g_MxDPM.Alloc("FastM", LA+1, LB+1);\r
-       g_MxDPD.Alloc("FastD", LA+1, LB+1);\r
-       g_MxDPI.Alloc("FastI", LA+1, LB+1);\r
-\r
-       g_MxTBM.Alloc("FastTBM", LA+1, LB+1);\r
-       g_MxTBD.Alloc("FastTBD", LA+1, LB+1);\r
-       g_MxTBI.Alloc("FastTBI", LA+1, LB+1);\r
-\r
-       g_DPM = g_MxDPM.GetData();\r
-       g_DPD = g_MxDPD.GetData();\r
-       g_DPI = g_MxDPI.GetData();\r
-\r
-       g_TBM = g_MxTBM.GetData();\r
-       g_TBD = g_MxTBD.GetData();\r
-       g_TBI = g_MxTBI.GetData();\r
+       g_MxDPM.Alloc("FastM", LA+1, LB+1);
+       g_MxDPD.Alloc("FastD", LA+1, LB+1);
+       g_MxDPI.Alloc("FastI", LA+1, LB+1);
+
+       g_MxTBM.Alloc("FastTBM", LA+1, LB+1);
+       g_MxTBD.Alloc("FastTBD", LA+1, LB+1);
+       g_MxTBI.Alloc("FastTBI", LA+1, LB+1);
+
+       g_DPM = g_MxDPM.GetData();
+       g_DPD = g_MxDPD.GetData();
+       g_DPI = g_MxDPI.GetData();
+
+       g_TBM = g_MxTBM.GetData();
+       g_TBD = g_MxTBD.GetData();
+       g_TBI = g_MxTBI.GetData();
        }
 
 static void SAVE_DPM(unsigned i, unsigned j, float x)