sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / venncommand.h

diff --git a/venncommand.h b/venncommand.h
index fe0e2a6c1a9a063e9eb08527c64b23703153fed0..98a59d404099dcb32052e07e93644be9f01e2869 100644 (file)
--- a/venncommand.h
+++ b/venncommand.h
@@ -25,8 +25,12 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "venn";                                        }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
        
+       string getHelpString(); 
+    string getOutputPattern(string);   
+       string getCitation() { return "http://www.mothur.org/wiki/Venn"; }
+       string getDescription()         { return "generates a Venn diagram from data provided in a shared file"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
        
@@ -38,9 +42,9 @@ private:
        vector<SharedRAbundVector*> lookup;
        set< set<int> > combosOfFour;
        SAbundVector* sabund;
-       int abund;
+       int abund, fontsize;
        
-       bool abort, allLines, nseqs, perm;
+       bool abort, allLines, nseqs, perm, sharedOtus;
        set<string> labels; //holds labels to be used
        string format, groups, calc, label, outputDir, sharedfile, listfile, inputfile;
        vector<string> Estimators, Groups, outputNames;