moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / venncommand.h

diff --git a/venncommand.h b/venncommand.h
deleted file mode 100644 (file)
index ae3c121..0000000
--- a/venncommand.h
+++ /dev/null
@@ -1,58 +0,0 @@
-#ifndef VENNCOMMAND_H
-#define VENNCOMMAND_H
-/*
- *  venncommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/30/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
- 
-#include "command.hpp"
-#include "inputdata.h"
-#include "sharedlistvector.h"
-#include "venn.h"
-#include "validcalculator.h"
-
-class VennCommand : public Command {
-
-public:
-       VennCommand(string);
-       VennCommand();
-       ~VennCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "venn";                                        }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Venn"; }
-       string getDescription()         { return "generates a Venn diagram from data provided in a shared file"; }
-
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       InputData* input;
-       SharedListVector* SharedList;
-       Venn* venn;
-       vector<Calculator*> vennCalculators;    
-       vector<SharedRAbundVector*> lookup;
-       set< set<int> > combosOfFour;
-       SAbundVector* sabund;
-       int abund, fontsize;
-       
-       bool abort, allLines, nseqs, perm;
-       set<string> labels; //holds labels to be used
-       string format, groups, calc, label, outputDir, sharedfile, listfile, inputfile;
-       vector<string> Estimators, Groups, outputNames;
-       
-       set< set<int> > findCombinations(int);
-       int getCombos(set<int>, set< set<int> >&);
-
-
-};
-
-
-
-#endif