added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / venncommand.cpp

diff --git a/venncommand.cpp b/venncommand.cpp
index 7ee0489d8780341587f684aaac1555c97560152b..5a5b9b3481e6e784ed5ef7c920bff78814300431 100644 (file)
--- a/venncommand.cpp
+++ b/venncommand.cpp
@@ -168,7 +168,7 @@ VennCommand::VennCommand(string option)  {
                        if (groups == "not found") { groups = ""; }
                        else { 
                                m->splitAtDash(groups, Groups);
-                               m->Groups = Groups;
+                               m->setGroups(Groups);
                        }
                        
                        calc = validParameter.validFile(parameters, "calc", false);                     
@@ -274,7 +274,7 @@ int VennCommand::execute(){
                                if (m->control_pressed) {
                                        for (int i = 0; i < vennCalculators.size(); i++) {      delete vennCalculators[i];      }
                                        for (int i = 0; i < lookup.size(); i++) {  delete lookup[i];  } 
-                                       m->Groups.clear(); delete venn; delete input;
+                                       m->clearGroups(); delete venn; delete input;
                                        for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);  }
                                        return 0;
                                }
@@ -357,7 +357,7 @@ int VennCommand::execute(){
                        
                        if (m->control_pressed) {
                                        for (int i = 0; i < vennCalculators.size(); i++) {      delete vennCalculators[i];      }
-                                       m->Groups.clear(); delete venn; delete input; 
+                                       m->clearGroups(); delete venn; delete input; 
                                        for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);  }
                                        return 0;
                        }
@@ -414,10 +414,10 @@ int VennCommand::execute(){
                
 
                        //reset groups parameter
-                       m->Groups.clear();  
+                       m->clearGroups();  
                        
                        if (m->control_pressed) {
-                                       m->Groups.clear(); delete venn; delete input;
+                                       m->clearGroups(); delete venn; delete input;
                                        for (int i = 0; i < vennCalculators.size(); i++) {      delete vennCalculators[i];      }
                                        for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);  }
                                        return 0;