updated errorchecking so it checks if the parameter is valid for the command.

[mothur.git] / validparameter.h

diff --git a/validparameter.h b/validparameter.h
index c03c034f41b6308b4945753147abda65cddf48d7..c59c1571e38d5b4ffba3004dd19957752d4339bb 100644 (file)
--- a/validparameter.h
+++ b/validparameter.h
@@ -23,10 +23,42 @@ class ValidParameters {
        public:
                ValidParameters();
                ~ValidParameters();
-               bool isValidParameter(string);
+               bool isValidParameter(string, string);
+               
        private:
-               map<string, string> parameters;
+               map<string, string> readdist;
+               map<string, string> readotu;
+               map<string, string> readtree;
+               map<string, string> cluster;
+               map<string, string> deconvolute;
+               map<string, string> parsimony;
+               map<string, string> collectsingle;
+               map<string, string> collectshared;
+               map<string, string> rarefactsingle;
+               map<string, string> rarefactshared;
+               map<string, string> summarysingle;
+               map<string, string> summaryshared;
+               map<string, string> unifracweighted;
+               map<string, string> unifracunweighted;
+               map<string, string> libshuff;
+               
                map<string, string>::iterator it;
+               
+               void initialReaddist();
+               void initialReadotu();
+               void initialReadtree();
+               void initialCluster();
+               void initialDeconvolute();
+               void initialParsimony();
+               void initialCollectsingle();
+               void initialCollectshared();
+               void initialRarefactsingle();
+               void initialRarefactshared();
+               void initialSummarysingle();
+               void initialSummaryshared();
+               void initialUnifracweighted();
+               void initialUnifracunweighted();
+               void initialLibshuff();
 
 };