added screen.seqs command - pds

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 4aad1c22c037515fcb5d6f166aae8af4842d8fd4..b67ee806116ae4b1cc8b568bb3c0d74bfcfccae3 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -239,6 +239,12 @@ void ValidParameters::initCommandParameters() {
 
                string getlineArray[] =  {};
                commandParameters["get.line"] = addParameters(getlineArray, sizeof(getlineArray)/sizeof(string));
+               
+               string getsabundArray[] =  {"line", "label"};
+               commandParameters["get.sabund"] = addParameters(getsabundArray, sizeof(getsabundArray)/sizeof(string));
+               
+               string getrabundArray[] =  {"line", "label"};
+               commandParameters["get.rabund"] = addParameters(getrabundArray, sizeof(getrabundArray)/sizeof(string));
 
                string rarefactionsingleArray[] =  {"iters","freq","line","label","calc","abund"};
                commandParameters["rarefaction.single"] = addParameters(rarefactionsingleArray, sizeof(rarefactionsingleArray)/sizeof(string));
@@ -270,6 +276,12 @@ void ValidParameters::initCommandParameters() {
                string filterseqsArray[] =  {"fasta","phylip","clustal","nexus", "trump", "soft", "hard", "vertical"};
                commandParameters["filter.seqs"] = addParameters(filterseqsArray, sizeof(filterseqsArray)/sizeof(string));
 
+               string summaryseqsArray[] =  {"fasta","phylip","clustal","nexus"};
+               commandParameters["summary.seqs"] = addParameters(summaryseqsArray, sizeof(summaryseqsArray)/sizeof(string));
+
+               string screenseqsArray[] =  {"fasta","phylip","clustal","nexus", "start", "end", "maxambig", "maxhomop", "minlength", "maxlength", "name", "group"};
+               commandParameters["screen.seqs"] = addParameters(screenseqsArray, sizeof(screenseqsArray)/sizeof(string));
+
                string vennArray[] =  {"groups","line","label","calc"};
                commandParameters["venn"] = addParameters(vennArray, sizeof(vennArray)/sizeof(string));