modified bin.seqs and get.oturep commands to include use of a groupfile if provided...

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 5da87d1df8ee6d568264313ece64bbc7177cae40..6719e2c4eb706db4a99b6620eb861e3f41268971 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -273,16 +273,13 @@ void ValidParameters::initCommandParameters() {
                string vennArray[] =  {"groups","line","label","calc"};
                commandParameters["venn"] = addParameters(vennArray, sizeof(vennArray)/sizeof(string));
                
-               string binseqsArray[] =  {"fasta","line","label","name"};
+               string binseqsArray[] =  {"fasta","line","label","name", "group"};
                commandParameters["bin.seqs"] = addParameters(binseqsArray, sizeof(binseqsArray)/sizeof(string));
                
                string distsharedArray[] =  {"line","label","calc","groups"};
                commandParameters["dist.shared"] = addParameters(distsharedArray, sizeof(distsharedArray)/sizeof(string));
                
-               string getrepseqsArray[] =  {"fasta","line","label","name", "group"};
-               commandParameters["get.repseqs"] = addParameters(getrepseqsArray, sizeof(getrepseqsArray)/sizeof(string));
-               
-               string getOTURepArray[] =  {"fasta","list","line","label","name"};
+               string getOTURepArray[] =  {"fasta","list","line","label","name", "group"};
                commandParameters["get.oturep"] = addParameters(getOTURepArray, sizeof(getOTURepArray)/sizeof(string));
                
                string treeGroupsArray[] =  {"line","label","calc","groups"};