added bootstrap.shared command and fixed some bugs with heatmap

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 98dbde868627018c08221875a65c10426a9f0947..3fbf307b69918626e097e2e61a11cfcf54244bb4 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -283,7 +283,7 @@ void ValidParameters::initCommandParameters() {
                string unifracUnweightedArray[] =  {"groups","iters"};
                commandParameters["unifrac.unweighted"] = addParameters(unifracUnweightedArray, sizeof(unifracUnweightedArray)/sizeof(string));
 
-               string heatmapArray[] =  {"groups","line","label","sorted","scaler"};
+               string heatmapArray[] =  {"groups","line","label","sorted","scale"};
                commandParameters["heatmap"] = addParameters(heatmapArray, sizeof(heatmapArray)/sizeof(string));
 
                string vennArray[] =  {"groups","line","label","calc"};
@@ -296,7 +296,10 @@ void ValidParameters::initCommandParameters() {
                commandParameters["get.oturep"] = addParameters(getOTURepArray, sizeof(getOTURepArray)/sizeof(string));
                
                string treeGroupsArray[] =  {"line","label","calc","groups"};
-               commandParameters["tree.groups"] = addParameters(treeGroupsArray, sizeof(treeGroupsArray)/sizeof(string));
+               commandParameters["tree.shared"] = addParameters(treeGroupsArray, sizeof(treeGroupsArray)/sizeof(string));
+               
+               string bootstrapArray[] =  {"line","label","calc","groups","iters"};
+               commandParameters["bootstrap.shared"] = addParameters(bootstrapArray, sizeof(bootstrapArray)/sizeof(string));
                
                string quitArray[] = {};
                commandParameters["quit"] = addParameters(quitArray, sizeof(quitArray)/sizeof(string));
@@ -376,4 +379,3 @@ vector<string> ValidParameters::addParameters(string parameters[], int size) {
        }
 }
 
-