added headers to shared and relabund files

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 7855ddedd11f05b8e8c628e2d5c49c82be646a9b..3e1f3498ca0be8f0f010bd038273f3ea70f89d3c 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -221,6 +221,10 @@ string ValidParameters::validFile(map<string, string>& container, string paramet
                if(it != container.end()){ //no parameter given
 
                        if(isFile == true) {
+                               
+                               int pos = (it->second).find(".tx.");
+                               if (pos != string::npos) { m->sharedHeaderMode = "tax"; }
+                               else { m->sharedHeaderMode = "otu"; }
                        
                        #ifdef USE_MPI  
                                int pid, processors;