commands["read.tree"] = "read.tree";
commands["read.seqs"] = "read.seqs";
commands["bin.seqs"] = "bin.seqs";
+ commands["get.repseqs"] = "get.repseqs";
commands["get.oturep"] = "get.oturep";
commands["cluster"] = "cluster";
commands["deconvolute"] = "deconvolute";