finishing the container classes, combining read.otu and read.list commands. some...

[mothur.git] / validcommands.cpp

diff --git a/validcommands.cpp b/validcommands.cpp
index 70a6502424a5524bbd517d53aa791c6924f552a5..bd9d80eb9efb960fcb8bec4218a30be7e198b04a 100644 (file)
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -16,7 +16,6 @@ ValidCommands::ValidCommands() {
        
                commands["read.dist"]                   = "read.dist"; 
                commands["read.otu"]                    = "read.otu"; 
-               commands["read.list"]                   = "read.list"; 
                commands["cluster"]                             = "cluster"; 
                commands["deconvolute"]                 = "deconvolute"; 
                commands["help"]                                = "help"; 
@@ -51,7 +50,7 @@ bool ValidCommands::isValidCommand(string command) {
                if ((commands.find(command)) != (commands.end())) {
                        return true;
                }else{
-                       cout << command << " is not a valid command in Mothur.  Valid commands are read.dist(), read.list(), cluster(), collect.single(), collect.shared(), rarefaction.single(), rarefaction.shared(), summary.single(), summary.shared(), quit(), help()." << endl;
+                       cout << command << " is not a valid command in Mothur.  Valid commands are read.dist(), read.otu(), cluster(), collect.single(), collect.shared(), rarefaction.single(), rarefaction.shared(), summary.single(), summary.shared(), quit(), help()." << endl;
                        return false;
                }