added alignment code

[mothur.git] / validcommands.cpp

diff --git a/validcommands.cpp b/validcommands.cpp
index 5549e6396527c198a5131ba85c42ee356c07774f..a5f36519b7af379e3e5e761021f6b1c060e297c9 100644 (file)
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -43,6 +43,7 @@ ValidCommands::ValidCommands() {
                commands["concensus"]                   = "concensus";
                commands["help"]                                = "help"; 
                commands["filter.seqs"]                 = "filter.seqs";
+               commands["align.seqs"]                  = "align.seqs";
                commands["quit"]                                = "quit";