commands["cluster"] = "cluster";
commands["deconvolute"] = "deconvolute";
commands["dist.seqs"] = "dist.seqs";
- commands["dist.shared"] = "dist.shared"; //matrix output
+ commands["dist.shared"] = "dist.shared";
commands["collect.single"] = "collect.single";
commands["collect.shared"] = "collect.shared";
commands["rarefaction.single"] = "rarefaction.single";