added bootstrap.shared command and fixed some bugs with heatmap

[mothur.git] / validcommands.cpp

diff --git a/validcommands.cpp b/validcommands.cpp
index 2adbc0ee298ccc7b177d2c87be0c11cfb7df4f77..696214e236be1b44cfc63335ee9caecc96249ea8 100644 (file)
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -18,6 +18,7 @@ ValidCommands::ValidCommands() {
                commands["read.otu"]                    = "read.otu";
                commands["read.tree"]                   = "read.tree"; 
                commands["bin.seqs"]                    = "bin.seqs"; 
+               commands["get.oturep"]                  = "get.oturep";
                commands["cluster"]                             = "cluster"; 
                commands["deconvolute"]                 = "deconvolute"; 
                commands["collect.single"]              = "collect.single"; 
@@ -30,11 +31,13 @@ ValidCommands::ValidCommands() {
                commands["unifrac.weighted"]    = "unifrac.weighted"; 
                commands["unifrac.unweighted"]  = "unifrac.unweighted"; 
                commands["libshuff"]                    = "libshuff";
+               commands["tree.shared"]                 = "tree.shared";
                commands["heatmap"]                             = "heatmap";
                commands["venn"]                                = "venn";
                commands["get.group"]           = "get.group";
                commands["get.label"]           = "get.label";
                commands["get.line"]            = "get.line";
+               commands["bootstrap.shared"]    = "bootstrap.shared";
                commands["help"]                                = "help"; 
                commands["quit"]                                = "quit";