commands["read.dist"] = "read.dist";
commands["read.otu"] = "read.otu";
commands["read.tree"] = "read.tree";
+ commands["read.seqs"] = "read.seqs";
commands["bin.seqs"] = "bin.seqs";
commands["get.oturep"] = "get.oturep";
commands["cluster"] = "cluster";
commands["bootstrap.shared"] = "bootstrap.shared";
commands["concensus"] = "concensus";
commands["help"] = "help";
+ commands["filter.seqs"] = "filter.seqs";
commands["quit"] = "quit";