]> git.donarmstrong.com Git - mothur.git/blobdiff - validcalculator.h
changes while testing
[mothur.git] / validcalculator.h
index 6cf37924144906276a9aa39c491ffed301c35510..59f6bb3488ddb03acdc9a8682b748e9347f04fb9 100644 (file)
@@ -9,9 +9,9 @@
  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
-using namespace std;
 
 #include "mothur.h"
+#include "mothurout.h"
 
 //This class contains a list of all valid calculators in Mothur.  
 //It has a function which will tell you if your calculator is valid for the given parameter.
@@ -23,6 +23,9 @@ class ValidCalculators {
                ValidCalculators();
                ~ValidCalculators();
                bool isValidCalculator(string, string);
+               void printCalc(string, ostream&);
+               string printCalc(string);
+               void printCitations(vector<string>);
                
        private:
                map<string, string> single;
@@ -34,7 +37,12 @@ class ValidCalculators {
                map<string, string> vennsingle;
                map<string, string> vennshared;
                map<string, string> treegroup;
+               map<string, string> matrix;
+               map<string, string> heat;
+               map<string, string> boot;
+               map<string, string> distance;
                map<string, string>::iterator it;
+               set<string> allCalcs;
                
                void initialSingle();
                void initialShared();
@@ -45,6 +53,12 @@ class ValidCalculators {
                void initialVennSingle();
                void initialVennShared();
                void initialTreeGroups();
+               void initialMatrix();
+               void initialBoot();
+               void initialDistance();
+               void initialHeat();
+               
+               MothurOut* m;
 };
 
 #endif