remove.rare command

[mothur.git] / validcalculator.cpp

diff --git a/validcalculator.cpp b/validcalculator.cpp
index 6583bbefc9564d17959d4b1240fc589fea54751d..f8c7cc3352e9281defb720c24d15ebda4337a44d 100644 (file)
--- a/validcalculator.cpp
+++ b/validcalculator.cpp
@@ -516,16 +516,46 @@ void ValidCalculators::initialHeat() {
 /********************************************************************/
 void ValidCalculators::initialMatrix() {
        try {   
-               matrix["jabund"]                                = "jabund";
+               matrix["sharedsobs"]                            = "sharedsobs";
+               matrix["sharedchao"]                            = "sharedchao";
+               matrix["sharedace"]                             = "sharedace";
+               matrix["jabund"]                                        = "jabund";
                matrix["sorabund"]                              = "sorabund";
-               matrix["jclass"]                                = "jclass";
+               matrix["jclass"]                                        = "jclass";
                matrix["sorclass"]                              = "sorclass";
                matrix["jest"]                                  = "jest";
-               matrix["sorest"]                                = "sorest";
+               matrix["sorest"]                                        = "sorest";
                matrix["thetayc"]                               = "thetayc";
-               matrix["thetan"]                                = "thetan";
+               matrix["thetan"]                                        = "thetan";
+               matrix["kstest"]                                        = "kstest";
+               matrix["whittaker"]                             = "whittaker";
+               matrix["sharednseqs"]                   = "sharednseqs";
+               matrix["ochiai"]                                        = "ochiai";
+               matrix["anderberg"]                             = "anderberg";
+               matrix["kulczynski"]                            = "kulczynski";
+               matrix["kulczynskicody"]                        = "kulczynskicody";
+               matrix["lennon"]                                        = "lennon";
                matrix["morisitahorn"]                  = "morisitahorn";
-               matrix["braycurtis"]                    = "braycurtis";
+               matrix["braycurtis"]                            = "braycurtis";
+               matrix["odum"]                                  = "odum";
+               matrix["canberra"]                              = "canberra";
+               matrix["structeuclidean"]               = "structeuclidean";
+               matrix["structchord"]                   = "structchord";
+               matrix["hellinger"]                             = "hellinger";
+               matrix["manhattan"]                             = "manhattan";
+               matrix["structpearson"]                 = "structpearson";
+               matrix["structkulczynski"]              = "structkulczynski";
+               matrix["structchi2"]                            = "structchi2";
+               matrix["soergel"]                               = "soergel";
+               matrix["spearman"]                              = "spearman";
+               matrix["speciesprofile"]                        = "speciesprofile";
+               matrix["hamming"]                               = "hamming";
+               matrix["gower"]                                 = "gower";
+               matrix["memchi2"]                               = "memchi2";
+               matrix["memchord"]                              = "memchord";
+               matrix["memeuclidean"]                  = "memeuclidean";
+               matrix["mempearson"]                            = "mempearson";
+               
        }
        catch(exception& e) {
                m->errorOut(e, "ValidCalculator", "initialMatrix");