fixed bug with trim.seqs- when a file is blank for a grouping mothur removed it,...

[mothur.git] / validcalculator.cpp

diff --git a/validcalculator.cpp b/validcalculator.cpp
index bc8c4b8d7ab4b753cfa3f75a7c7da0b8ba740bc0..d3a641f0b9c37286d241f126e01d708a144569c6 100644 (file)
--- a/validcalculator.cpp
+++ b/validcalculator.cpp
@@ -260,6 +260,18 @@ void ValidCalculators::initialShared() {
                shared["lennon"]                                = "lennon";
                shared["morisitahorn"]                  = "morisitahorn";
                shared["braycurtis"]                    = "braycurtis";
+               shared["odum"]                                  = "odum";
+               shared["canberra"]                              = "canberra";
+               shared["stricteuclidean"]               = "stricteuclidean";
+               shared["strictchord"]                   = "strictchord";
+               shared["hellinger"]                             = "hellinger";
+               shared["manhattan"]                             = "manhattan";
+               shared["strictpearson"]                 = "strictpearson";
+               shared["soergel"]                               = "soergel";
+               shared["spearman"]                              = "spearman";
+               shared["strictkulczynski"]              = "strictkulczynski";
+               shared["speciesprofile"]                = "speciesprofile";
+               shared["hamming"]                               = "hamming";
                shared["default"]                   = "default";
        }
        catch(exception& e) {
@@ -338,7 +350,7 @@ void ValidCalculators::initialSharedSummary() {
                sharedsummary["sharedchao"]                             = "sharedchao";
                sharedsummary["sharedace"]                              = "sharedace";
                sharedsummary["jabund"]                                 = "jabund";
-               sharedsummary["sorabund"]                       = "sorabund";
+               sharedsummary["sorabund"]                               = "sorabund";
                sharedsummary["jclass"]                                 = "jclass";
                sharedsummary["sorclass"]                               = "sorclass";
                sharedsummary["jest"]                                   = "jest";
@@ -355,6 +367,18 @@ void ValidCalculators::initialSharedSummary() {
                sharedsummary["lennon"]                                 = "lennon";
                sharedsummary["morisitahorn"]                   = "morisitahorn";
                sharedsummary["braycurtis"]                             = "braycurtis";
+               sharedsummary["odum"]                                   = "odum";
+               sharedsummary["canberra"]                               = "canberra";
+               sharedsummary["stricteuclidean"]                = "stricteuclidean";
+               sharedsummary["strictchord"]                    = "strictchord";
+               sharedsummary["hellinger"]                              = "hellinger";
+               sharedsummary["manhattan"]                              = "manhattan";
+               sharedsummary["strictpearson"]                  = "strictpearson";
+               sharedsummary["strictkulczynski"]               = "strictkulczynski";
+               sharedsummary["soergel"]                                = "soergel";
+               sharedsummary["spearman"]                               = "spearman";
+               sharedsummary["speciesprofile"]                 = "speciesprofile";
+               sharedsummary["hamming"]                                = "hamming";
                sharedsummary["default"]                                = "default";
        }
        catch(exception& e) {