added calcs to tree.shared. working on remove.rare command

[mothur.git] / validcalculator.cpp

diff --git a/validcalculator.cpp b/validcalculator.cpp
index 6242d5aaf5c7e49eb54a75b26a0eb48425302123..6583bbefc9564d17959d4b1240fc589fea54751d 100644 (file)
--- a/validcalculator.cpp
+++ b/validcalculator.cpp
@@ -447,6 +447,9 @@ void ValidCalculators::initialVennShared() {
 /********************************************************************/
 void ValidCalculators::initialTreeGroups() {
        try {   
+               treegroup["sharedsobs"]                         = "sharedsobs";
+               treegroup["sharedchao"]                         = "sharedchao";
+               treegroup["sharedace"]                          = "sharedace";
                treegroup["jabund"]                                     = "jabund";
                treegroup["sorabund"]                           = "sorabund";
                treegroup["jclass"]                                     = "jclass";
@@ -455,8 +458,35 @@ void ValidCalculators::initialTreeGroups() {
                treegroup["sorest"]                                     = "sorest";
                treegroup["thetayc"]                            = "thetayc";
                treegroup["thetan"]                                     = "thetan";
+               treegroup["kstest"]                                     = "kstest";
+               treegroup["whittaker"]                          = "whittaker";
+               treegroup["sharednseqs"]                        = "sharednseqs";
+               treegroup["ochiai"]                                     = "ochiai";
+               treegroup["anderberg"]                          = "anderberg";
+               treegroup["kulczynski"]                         = "kulczynski";
+               treegroup["kulczynskicody"]                     = "kulczynskicody";
+               treegroup["lennon"]                                     = "lennon";
                treegroup["morisitahorn"]                       = "morisitahorn";
                treegroup["braycurtis"]                         = "braycurtis";
+               treegroup["odum"]                                       = "odum";
+               treegroup["canberra"]                           = "canberra";
+               treegroup["structeuclidean"]            = "structeuclidean";
+               treegroup["structchord"]                        = "structchord";
+               treegroup["hellinger"]                          = "hellinger";
+               treegroup["manhattan"]                          = "manhattan";
+               treegroup["structpearson"]                      = "structpearson";
+               treegroup["structkulczynski"]           = "structkulczynski";
+               treegroup["structchi2"]                         = "structchi2";
+               treegroup["soergel"]                            = "soergel";
+               treegroup["spearman"]                           = "spearman";
+               treegroup["speciesprofile"]                     = "speciesprofile";
+               treegroup["hamming"]                            = "hamming";
+               treegroup["gower"]                                      = "gower";
+               treegroup["memchi2"]                            = "memchi2";
+               treegroup["memchord"]                           = "memchord";
+               treegroup["memeuclidean"]                       = "memeuclidean";
+               treegroup["mempearson"]                         = "mempearson";
+               
        }
        catch(exception& e) {
                m->errorOut(e, "ValidCalculator", "initialTreeGroups");