removed read.dist, read.otu, read.tree and globaldata. added current to defaults...

[mothur.git] / validcalculator.cpp

diff --git a/validcalculator.cpp b/validcalculator.cpp
index f8c7cc3352e9281defb720c24d15ebda4337a44d..2798b53ba50c8f3ffd50a20fcaa7462d62a071a7 100644 (file)
--- a/validcalculator.cpp
+++ b/validcalculator.cpp
@@ -666,4 +666,79 @@ void ValidCalculators::printCalc(string parameter, ostream& out) {
        }
 }
 /********************************************************************/
+string ValidCalculators::printCalc(string parameter) {
+       try{
+               string output = "The available estimators for calc are ";
+               //are you looking for a calculator for a single parameter
+               if (parameter == "single") {
+                       for (it = single.begin(); it != single.end(); it++) {
+                               output += it->first + ", ";
+                       }
+                       //are you looking for a calculator for a shared parameter
+               }else if (parameter == "shared") {
+                       for (it = shared.begin(); it != shared.end(); it++) {
+                               output += it->first + ", ";
+                       }
+                       //are you looking for a calculator for a rarefaction parameter
+               }else if (parameter == "rarefaction") {
+                       for (it = rarefaction.begin(); it != rarefaction.end(); it++) {
+                               output += it->first + ", ";
+                       }
+                       //are you looking for a calculator for a summary parameter
+               }else if (parameter == "summary") {
+                       for (it = summary.begin(); it != summary.end(); it++) {
+                               output += it->first + ", ";
+                       }
+                       //are you looking for a calculator for a sharedsummary parameter
+               }else if (parameter == "sharedsummary") {
+                       for (it = sharedsummary.begin(); it != sharedsummary.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "sharedrarefaction") {
+                       for (it = sharedrarefaction.begin(); it != sharedrarefaction.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "vennsingle") {
+                       for (it = vennsingle.begin(); it != vennsingle.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "vennshared") {
+                       for (it = vennshared.begin(); it != vennshared.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "treegroup") {
+                       for (it = treegroup.begin(); it != treegroup.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "matrix") {
+                       for (it = matrix.begin(); it != matrix.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "heat") {
+                       for (it = heat.begin(); it != heat.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "boot") {
+                       for (it = boot.begin(); it != boot.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }else if (parameter == "distance") {
+                       for (it = distance.begin(); it != distance.end(); it++) {
+                               output += it->first + ", ";
+                       }
+               }
+               
+               //rip off comma
+               output = output.substr(0, output.length()-1);
+               output += "\n";
+               
+               return output;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "ValidCalculator", "printCalc");
+               exit(1);
+       }
+}
+/********************************************************************/
+