added modify names parameter to set.dir

[mothur.git] / uvest.cpp

diff --git a/uvest.cpp b/uvest.cpp
index 819be0af66bbdb23d989587ee4c6ca676677ea76..f0ca81e99748534f3eff5b28d401e04ec8b116b6 100644 (file)
--- a/uvest.cpp
+++ b/uvest.cpp
@@ -29,7 +29,7 @@ EstOutput UVEst::getUVest(vector<SharedRAbundVector*> shared) {
                sumSharedA1 = the sum of all shared otus in A where B = 1
                sumSharedB1 = the sum of all shared otus in B where A = 1 */
                
-               for (int i = 0; i < shared[0]->size(); i++) {
+               for (int i = 0; i < shared[0]->getNumBins(); i++) {
                        //store in temps to avoid multiple repetitive function calls
                        tempA = shared[0]->getAbundance(i);
                        tempB = shared[1]->getAbundance(i);
@@ -80,15 +80,9 @@ EstOutput UVEst::getUVest(vector<SharedRAbundVector*> shared) {
                return results;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the UVEst class Function getUVest. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               m->errorOut(e, "UVEst", "getUVest");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the UVEst class Function getUVest. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
-
-
 }
 
 /***********************************************************************/