moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / unweighted.h

diff --git a/unweighted.h b/unweighted.h
deleted file mode 100644 (file)
index c6c13bb..0000000
--- a/unweighted.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef UNWEIGHTED_H
-#define UNWEIGHTED_H
-
-
-/*
- *  unweighted.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 2/9/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "treecalculator.h"
-#include "treemap.h"
-
-/***********************************************************************/
-
-class Unweighted : public TreeCalculator  {
-       
-       public:
-        Unweighted(bool r) : includeRoot(r) {};
-               ~Unweighted() {};
-               EstOutput getValues(Tree*, int, string);
-               EstOutput getValues(Tree*, string, string, int, string);
-               
-       private:
-               struct linePair {
-                       int start;
-                       int num;
-                       linePair(int i, int j) : start(i), num(j) {}
-               };
-               vector<linePair> lines;
-               
-               EstOutput data;
-               int processors;
-               string outputDir;
-               map< vector<string>, set<int> > rootForGrouping;  //maps a grouping combo to the roots for that combo
-               bool includeRoot;
-               
-               EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
-               EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
-               EstOutput driver(Tree*, vector< vector<string> >, int, int, bool, TreeMap*); 
-               EstOutput createProcesses(Tree*, vector< vector<string> >, bool, TreeMap*);
-               int getRoot(Tree*, int, vector<string>);
-};
-
-/***********************************************************************/
-
-#endif