merged pat's trim seqs edits with sarah's major overhaul of global data; also added...

[mothur.git] / unifracweightedcommand.h

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 2d78d57fe827a0678421f39a44c0d2e6fe4cedf0..9ea78baf17370d7c068e40d56014f2f4f6d49010 100644 (file)
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -48,19 +48,13 @@ class UnifracWeightedCommand : public Command {
                vector< map<float, float> > rScoreFreq;  //map <weighted score, number of random trees with that score.> -vector entry for each combination.
                vector< map<float, float> > rCumul;  //map <weighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each c                                                                
                map<float, float>  validScores;  //map contains scores from random
-               map<float, float>::iterator it2;
-               map<float, float>::iterator it;
                
-               OptionParser* parser;
-               map<string, string> parameters;
-               map<string, string>::iterator it4;
                bool abort;
                string groups, itersString;
                vector<string> Groups; //holds groups to be used
 
                
-               ofstream outSum, out;
-               ifstream inFile;
+               ofstream outSum;
                
                void printWSummaryFile();
                void printWeightedFile();