you can now use a distance matrix as input for the heatmap.sim command.

[mothur.git] / unifracweightedcommand.h

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 5f55deea98379b5813bed720fe9fad3bd76ac23f..9c0ad9939221f6a94083cac9300344004e2e707d 100644 (file)
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -49,7 +49,7 @@ class UnifracWeightedCommand : public Command {
                vector< map<float, float> > rCumul;  //map <weighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each c                                                                
                map<float, float>  validScores;  //map contains scores from random
                
-               bool abort;
+               bool abort, phylip, random;
                string groups, itersString;
                vector<string> Groups; //holds groups to be used
 
@@ -58,6 +58,7 @@ class UnifracWeightedCommand : public Command {
                
                void printWSummaryFile();
                void printWeightedFile();  
+               void createPhylipFile();
                //void removeValidScoresDuplicates();
                int findIndex(float, int);
                void calculateFreqsCumuls();