added root parameter to the unifrac commands so you can choose to include the entire...

[mothur.git] / unifracweightedcommand.h

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 5bb690a854ed5c13f62a18fedc51cd39eee93f3a..2eee7c44e674073420c217f1b4d49aa4dc769497 100644 (file)
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -60,7 +60,7 @@ class UnifracWeightedCommand : public Command {
                vector< map<float, float> > rCumul;  //map <weighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each c                                                                
                map<float, float>  validScores;  //map contains scores from random
                
-               bool abort, phylip, random;
+               bool abort, phylip, random, includeRoot;
                string groups, itersString, outputForm;
                vector<string> Groups, outputNames; //holds groups to be used
                map<string, vector<string> > outputTypes;