parsimony with groups

[mothur.git] / unifracweightedcommand.cpp

diff --git a/unifracweightedcommand.cpp b/unifracweightedcommand.cpp
index a99459deeef74b6e99eab76c43b7a76787366b20..f7ad5253bb019f785ff01dd36317219b61db4c24 100644 (file)
--- a/unifracweightedcommand.cpp
+++ b/unifracweightedcommand.cpp
@@ -72,7 +72,6 @@ int UnifracWeightedCommand::execute() {
                        
                        //get scores for random trees
                        for (int j = 0; j < iters; j++) {
-//                             int n = 1;
                                int count = 0;
                                for (int r=0; r<numGroups; r++) { 
                                        for (int l = r+1; l < numGroups; l++) {
@@ -90,14 +89,11 @@ int UnifracWeightedCommand::execute() {
                                                        //get wscore of random tree
                                                        randomData = weighted->getValues(randT, tmap->namesOfGroups[r], tmap->namesOfGroups[l]);
                                                }
-//                                             randT->createNewickFile("hold"+toString(r)+toString(l)+toString(j));
-
                                                //save scores
                                                rScores[count].push_back(randomData[0]);
                                                validScores[count][randomData[0]] = randomData[0];
                                                count++;
                                        }
-//                                     n++;
                                }
                        }