working on sra and get.mimarkspackage commands. added file parameter to cluster...

[mothur.git] / unifracweightedcommand.cpp

diff --git a/unifracweightedcommand.cpp b/unifracweightedcommand.cpp
index 1c146ac4d1b1168093cc6df20a8d37a930e1d56b..e7009322c66ba8df3a7838fca8073bbfcd0034dd 100644 (file)
--- a/unifracweightedcommand.cpp
+++ b/unifracweightedcommand.cpp
@@ -768,7 +768,7 @@ int UnifracWeightedCommand::createProcesses(Tree* t, vector< vector<string> > na
 #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
                //loop through and create all the processes you want
                while (process != processors) {
-                       int pid = fork();
+                       pid_t pid = fork();
                        
                        if (pid > 0) {
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -778,7 +778,7 @@ int UnifracWeightedCommand::createProcesses(Tree* t, vector< vector<string> > na
                        
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = outputDir + toString(getpid()) + ".weightedcommand.results.temp";
+                               string tempFile = outputDir + m->mothurGetpid(process) + ".weightedcommand.results.temp";
                                m->openOutputFile(tempFile, out);
                                for (int i = lines[process].start; i < (lines[process].start + lines[process].num); i++) { out << scores[i][(scores[i].size()-1)] << '\t';  } out << endl;
                                out.close();