added root parameter to the unifrac commands so you can choose to include the entire...

[mothur.git] / unifracunweightedcommand.h

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index a1f2bf37480acc446b94e2f96ab6647b5c9e07a8..cd46b62b3462a4db2baa57865743d4bb37c198a7 100644 (file)
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -50,7 +50,7 @@ class UnifracUnweightedCommand : public Command {
                vector< map<float, float> > rscoreFreq;  //map <unweighted score, number of random trees with that score.> -vector entry for each combination.
                vector< map<float, float> > rCumul;  //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.
                
-               bool abort, phylip, random;
+               bool abort, phylip, random, includeRoot;
                string groups, itersString, outputDir, outputForm;
                vector<string> Groups, outputNames; //holds groups to be used
                map<string, vector<string> > outputTypes;