added tree reader class to handle reading trees. Reworked the tree map to tree class...

[mothur.git] / unifracunweightedcommand.h

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index cd8d51dcad76a44dbc0ca064bd79a5ef3e0fbe80..8b243964fe4c427768a7c8076f58daf975caa99f 100644 (file)
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -36,12 +36,9 @@ class UnifracUnweightedCommand : public Command {
        
        
        private:
-               ReadTree* read;
-               SharedUtil* util;
                FileOutput* output;
                vector<Tree*> T;           //user trees
                TreeMap* tmap;
-               Unweighted* unweighted;
                string sumFile, allGroups;
                vector<string> groupComb; // AB. AC, BC...
                int iters, numGroups, numComp, counter, processors, numUniquesInName;
@@ -59,13 +56,10 @@ class UnifracUnweightedCommand : public Command {
 
                ofstream outSum, out;
                ifstream inFile;
-               map<string, string> nameMap;
                
                void printUWSummaryFile(int);
                void printUnweightedFile();
                void createPhylipFile(int);
-               int readNamesFile();
-                
                
 };