you can now use a distance matrix as input for the heatmap.sim command.

[mothur.git] / unifracunweightedcommand.h

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index 2fca41a8388e7d3a6f20bbe79536cae9246eb2fb..155fa75d6185d3d1bf10923ca56903a9e3e85aa8 100644 (file)
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -45,7 +45,7 @@ class UnifracUnweightedCommand : public Command {
                vector< map<float, float> > rscoreFreq;  //map <unweighted score, number of random trees with that score.> -vector entry for each combination.
                vector< map<float, float> > rCumul;  //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.
                
-               bool abort;
+               bool abort, phylip, random;
                string groups, itersString;
                vector<string> Groups; //holds groups to be used
 
@@ -54,6 +54,7 @@ class UnifracUnweightedCommand : public Command {
                
                void printUWSummaryFile(int);
                void printUnweightedFile();
+               void createPhylipFile(int);
                 
                
 };