fixed valid parameters to include shared parameter for read.shared command.

[mothur.git] / unifracunweightedcommand.cpp

diff --git a/unifracunweightedcommand.cpp b/unifracunweightedcommand.cpp
index 6fd986fc6022d6642179d58ed3b497c4f2166439..dd1a3f9c236f9a86b022c99a3e6dd2d2109b1dfa 100644 (file)
--- a/unifracunweightedcommand.cpp
+++ b/unifracunweightedcommand.cpp
@@ -165,15 +165,14 @@ void UnifracUnweightedCommand::printUWSummaryFile() {
                outSum.setf(ios::fixed, ios::floatfield); outSum.setf(ios::showpoint);
                        
                //print each line
-               for (int i = 0; i< T.size(); i++) {
-                       for(int a = 0; a < numComp; a++) {
-                               if (UWScoreSig[a][i] > (1/(float)iters)) {
-                                       outSum << setprecision(globaldata->getIters().length()) << i+1 << '\t' << groupComb[a] << '\t' << utreeScores[a][i] << '\t' << UWScoreSig[a][i] << endl;
-                                       cout << setprecision(globaldata->getIters().length()) << i+1 << '\t' << groupComb[a] << '\t' << utreeScores[a][i] << '\t' << UWScoreSig[a][i] << endl;
-                               }else {
-                                       outSum << setprecision(globaldata->getIters().length()) << i+1 << '\t' << groupComb[a] << '\t' << utreeScores[a][i] << '\t' << "<" << (1/float(iters)) << endl;
-                                       cout << setprecision(globaldata->getIters().length()) << i+1 << '\t' << groupComb[a] << '\t' << utreeScores[a][i] << '\t' << "<" << (1/float(iters)) << endl;
-                               }
+
+               for(int a = 0; a < numComp; a++) {
+                       if (UWScoreSig[a][0] > (1/(float)iters)) {
+                               outSum << setprecision(6) << groupComb[a] << '\t' << '\t' << utreeScores[a][0] << '\t' << setprecision(globaldata->getIters().length()) << UWScoreSig[a][0] << endl;
+                               cout << setprecision(6)  << groupComb[a] << '\t' << '\t' << utreeScores[a][0] << '\t' << setprecision(globaldata->getIters().length()) << UWScoreSig[a][0] << endl; 
+                       }else {
+                               outSum << setprecision(6) << groupComb[a] << '\t' << '\t' << utreeScores[a][0] << '\t' << setprecision(globaldata->getIters().length()) << "<" << (1/float(iters)) << endl;
+                               cout << setprecision(6)  << groupComb[a] << '\t' << '\t' << utreeScores[a][0] << '\t' << setprecision(globaldata->getIters().length()) << "<" << (1/float(iters)) << endl; 
                        }
                }
                
@@ -303,10 +302,10 @@ void UnifracUnweightedCommand::output(vector<double> data){
                        getline(inFile, inputBuffer);
 //                     out     <<  inputBuffer << setprecision(6) << '\t' << data[0] << setprecision(globaldata->getIters().length()) << '\t' << data[1] << '\t' << data[2] << endl;
                
-                       out     <<  inputBuffer << setprecision(globaldata->getIters().length()-1) << '\t' << data[1] << '\t' << data[2] << endl;
+                       out << inputBuffer << '\t' << setprecision(6) << data[0] << setprecision(globaldata->getIters().length())  << '\t' << data[1] << '\t' << data[2] << endl;
                }
                else{
-                       out << setprecision(6) << data[0] << setprecision(globaldata->getIters().length()-1) << '\t' << data[1] << '\t' << data[2] << endl;
+                       out << setprecision(6) << data[0] << setprecision(globaldata->getIters().length())  << '\t' << data[1] << '\t' << data[2] << endl;
                }
 
        }