addition of trim.flows

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 21a5d41e759c761a3302340319c857544ffc313e..e4c2e0b6748eb6c795c8a171e1f1e8a6fb380f6f 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -37,11 +37,12 @@ private:
                unsigned long int end;
                linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
-
+       
        void getOligos(vector<string>&, vector<string>&);
        int stripBarcode(Sequence&, QualityScores&, int&);
        int stripForward(Sequence&, QualityScores&, int&);
        bool stripReverse(Sequence&, QualityScores&);
+       
        bool keepFirstTrim(Sequence&, QualityScores&);
        bool removeLastTrim(Sequence&, QualityScores&);
 
@@ -74,7 +75,6 @@ private:
        int driverCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>, linePair*, linePair*);     
        int createProcessesCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>);
        int setLines(string, string, vector<unsigned long int>&, vector<unsigned long int>&);
-       
 };
 
 #endif