fixed trim.seqs group counts by adding back in the primer group

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index c5cbd3da1b0044467e8558a5619dc651434bcffe..d40cfe3c5604d66009ba22b568b0df71f3688faa 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -69,7 +69,7 @@ private:
        map<string, int> groupToIndex;
        vector<string> primerNameVector;        //needed here?
        vector<string> barcodeNameVector;       //needed here?
-       vector<int> groupCounts;  //same order as barcodeNameVector
+       map<string, int> groupCounts;  
 
        vector<int> processIDS;   //processid
        vector<linePair*> lines;