added groups option to read.otu, added qtrim option to trim.seqs, fixed bug in get...

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 87b813ff9afa8575855c5cca69916de7287f9d9f..ca029616870f97a31482a40497c645e240ae72db 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -36,7 +36,7 @@ private:
        bool abort;
        string fastaFile, oligoFile, qFileName;
        
-       bool flip, allFiles;
+       bool flip, allFiles, qtrim;
        int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage;
        vector<string> forPrimer, revPrimer;
        map<string, int> barcodes;