changed file divide for trim.seqs

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index a904a10b683ce3fd04784e9ac1a60d02e293c368..93e8c776918ec9fa2d6f661d7c178380a4f47d66 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -26,8 +26,8 @@ private:
 
        struct linePair {
                unsigned long int start;
-               int num;
-               linePair(unsigned long int i, int j) : start(i), num(j) {}
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
 
        void getOligos(vector<string>&, vector<string>&);
@@ -60,7 +60,7 @@ private:
        
        int driverCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>, linePair*, linePair*);     
        int createProcessesCreateTrim(string, string, string, string, string, string, string, vector<string>, vector<string>);
-       int setLines(string, vector<linePair*>&);
+       int setLines(string, string, vector<unsigned long int>&, vector<unsigned long int>&);
        
 };