fixed bug in phylo.diversity rooting. added filename patterns and create filename...

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 1ffad218ccee951e7ac9097d04f84327099fda9d..60d29f9e56024de7a0d6d39478ce12872788acd5 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -27,8 +27,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "trim.seqs";   }
        string getCommandCategory()             { return "Sequence Processing";         }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "http://www.mothur.org/wiki/Trim.seqs"; }
        string getDescription()         { return "provides the preprocessing features needed to screen and sort pyrosequences"; }